Sanrrone / multiGenomicContextLinks
multiGenomicContext is a pipeline to see your protein in many genomic context as much as gbk you have.
☆10Updated 3 years ago
Alternatives and similar repositories for multiGenomicContext
Users that are interested in multiGenomicContext are comparing it to the libraries listed below
Sorting:
- R package for microbial pangenomics☆24Updated 3 years ago
- R package for computing alpha and beta contributional diversity metrics☆10Updated 2 years ago
- Working with the outputs of sourmash in R☆27Updated last year
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- Tools for extracting individual genomes from metagenomes☆16Updated last year
- Tools for analyzing trees☆13Updated 6 months ago
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆14Updated last year
- Simple R utilities for working with HMMER☆20Updated last year
- Dadaist2 🟨 Highway to R☆13Updated 7 months ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 4 years ago
- A smorgasbord of R functions for performing and teaching population genomic analyses☆19Updated last month
- ☆28Updated last year
- accessory functions for processing microbial community data☆12Updated 2 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 2 months ago
- statdivlab's teaching materials for STAMPS @ the MBL in 2019☆12Updated 6 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆29Updated 5 months ago
- Speedy versions of phyloseq functions☆48Updated last year
- ☆13Updated 5 years ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆18Updated 2 years ago
- a re-packaging of the sankey plot function for kraken reports taken from pavian and sankeyD3 from Florian Breitwieser☆13Updated 6 years ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆12Updated 4 years ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆16Updated 2 years ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Updated last year
- An easy way of MLSTyping your genomes in R.☆18Updated 4 years ago
- De novo VIral Genome Annotator☆23Updated last year
- Tools for visualising microbial community amplicon data☆69Updated last week
- Functions to manipulate and visualize microbial community data☆12Updated 2 years ago
- Workshop for NGS'18 conference, Barcelona 2018☆24Updated 6 years ago