Sanrrone / multiGenomicContextLinks
multiGenomicContext is a pipeline to see your protein in many genomic context as much as gbk you have.
☆10Updated 3 years ago
Alternatives and similar repositories for multiGenomicContext
Users that are interested in multiGenomicContext are comparing it to the libraries listed below
Sorting:
- Working with the outputs of sourmash in R☆28Updated 2 years ago
- Tools for extracting individual genomes from metagenomes☆16Updated 2 years ago
- Simple R utilities for working with HMMER☆19Updated last year
- R package for microbial pangenomics☆24Updated 3 years ago
- R package for computing alpha and beta contributional diversity metrics☆10Updated 2 years ago
- Tools for analyzing trees☆13Updated 7 months ago
- ALDEx_bioc is the working directory for updating bioconductor☆29Updated 7 months ago
- Tools for visualising microbial community amplicon data☆70Updated last month
- statdivlab's teaching materials for STAMPS @ the MBL in 2019☆12Updated 6 years ago
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆14Updated 2 weeks ago
- ggtree version of plotTree.R☆18Updated 7 years ago
- accessory functions for processing microbial community data☆12Updated 2 years ago
- Scalable relaxed clock phylogenetic dating☆27Updated 3 months ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 5 years ago
- Speedy versions of phyloseq functions☆48Updated last year
- Genome wide orthology inference and dNdS estimation☆96Updated 3 months ago
- A smorgasbord of R functions for performing and teaching population genomic analyses☆19Updated 3 months ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Updated last year
- Python version of PHLAWD☆21Updated last year
- R We There Yet?☆32Updated 8 months ago
- RADseq Data Exploration, Manipulation and Visualization using R☆59Updated 3 months ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 4 months ago
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Updated 6 years ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated 3 weeks ago
- An easy way of MLSTyping your genomes in R.☆18Updated 4 years ago
- Fast alignment-free pangenome creation and exploration☆28Updated 5 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- ☆13Updated 5 years ago