multiGenomicContext is a pipeline to see your protein in many genomic context as much as gbk you have.
☆11Oct 10, 2022Updated 4 years ago
Alternatives and similar repositories for multiGenomicContext
Users that are interested in multiGenomicContext are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The gview wiki migrated to GitHub.☆12Sep 3, 2020Updated 6 years ago
- R package for comparison of synteny conservation at the genome-wide scale.☆17Jun 6, 2024Updated 2 years ago
- LinearDisplay.pl is a program that generates publication quality linear maps of user-defined genetic features (e.g., ORFs, promoters, tra…☆10Apr 2, 2025Updated last year
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆33Jul 14, 2024Updated 2 years ago
- Flexible workflow designed for bacterial WGS analyses (annotation, core/pan-genome reconstruction, phylogeny)☆12Aug 6, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆11Updated this week
- R package to draw syntenic plots in 3 different styles☆47Feb 2, 2026Updated 8 months ago
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Mar 29, 2025Updated last year
- Genome-Genome circle synteny☆25Oct 9, 2026Updated 3 weeks ago
- ☆14Mar 28, 2018Updated 8 years ago
- An R package designed for drawing gene arrow maps☆102Updated this week
- ☆25Oct 6, 2026Updated 3 weeks ago
- ☆16Jul 9, 2026Updated 3 months ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆23Mar 8, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A comprehensive prokaryotic genome annotation pipeline☆92Oct 12, 2026Updated 2 weeks ago
- que paquete☆10Jul 17, 2024Updated 2 years ago
- Client for the Bioconductor AnnotationHub web resource☆20Oct 23, 2026Updated last week
- Mapping Geographical Flows☆12Nov 28, 2018Updated 7 years ago
- A set of R functions that help faciliate a lot of tedious processing☆19Aug 31, 2018Updated 8 years ago
- Fully automated generation of UCSC assembly hubs☆34Oct 2, 2024Updated 2 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆26Jul 22, 2024Updated 2 years ago
- OMAmer - tree-driven and alignment-free protein assignment to sub-families☆23Aug 9, 2026Updated 2 months ago
- Nextflow pipeline for species-specific typing of bacteria☆11Oct 13, 2026Updated 2 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A toolbox for comparative genomics.☆110May 26, 2021Updated 5 years ago
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆15Apr 14, 2023Updated 3 years ago
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆22Sep 9, 2026Updated last month
- R package for microbial pangenomics☆25Apr 12, 2022Updated 4 years ago
- Physalia course Machine Learning for Multi-Omics Integration☆21Jun 11, 2025Updated last year
- Talk to the NCBI EUtils☆23Oct 8, 2020Updated 6 years ago
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆24Jun 2, 2021Updated 5 years ago
- This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion☆21Mar 22, 2021Updated 5 years ago
- Bacterial GWAS analysis☆58Jun 12, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Scaling and Load Balancing Shiny for R and Python Apps with Docker☆13Jun 1, 2024Updated 2 years ago
- The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, and mitochondrial sequences.☆37Apr 13, 2024Updated 2 years ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Jun 17, 2022Updated 4 years ago
- A provenance library for bioinformatics workflows 🧬 🔀 📝☆14Jun 2, 2026Updated 5 months ago
- Lightweight Repackaging of 'Themes' for 'ggplot2'☆39Feb 14, 2026Updated 8 months ago
- Nextflow pipeline for bacterial clustering and linkage detection based on core genome analysis, designed to support genomic surveillance …☆12Jul 2, 2026Updated 3 months ago
- Conditional Reciprocal Best Blast☆44Mar 22, 2017Updated 9 years ago