multiGenomicContext is a pipeline to see your protein in many genomic context as much as gbk you have.
☆11Oct 10, 2022Updated 3 years ago
Alternatives and similar repositories for multiGenomicContext
Users that are interested in multiGenomicContext are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The gview wiki migrated to GitHub.☆12Sep 3, 2020Updated 5 years ago
- ☆11Sep 16, 2021Updated 4 years ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆33Jul 14, 2024Updated 2 years ago
- R package to draw syntenic plots in 3 different styles☆46Feb 2, 2026Updated 5 months ago
- ☆24Jan 7, 2026Updated 6 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆23Mar 8, 2024Updated 2 years ago
- Flexible workflow designed for bacterial WGS analyses (annotation, core/pan-genome reconstruction, phylogeny)☆12Aug 6, 2023Updated 2 years ago
- OMAmer - tree-driven and alignment-free protein assignment to sub-families☆23Jul 7, 2026Updated 2 weeks ago
- que paquete☆10Jul 17, 2024Updated 2 years ago
- Client for the Bioconductor AnnotationHub web resource☆19Jun 30, 2026Updated 3 weeks ago
- Scaling and Load Balancing Shiny for R and Python Apps with Docker☆13Jun 1, 2024Updated 2 years ago
- A set of R functions that help faciliate a lot of tedious processing☆19Aug 31, 2018Updated 7 years ago
- Conditional Reciprocal Best Blast☆44Mar 22, 2017Updated 9 years ago
- The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, and mitochondrial sequences.☆37Apr 13, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A comprehensive prokaryotic genome annotation pipeline☆90Jul 13, 2026Updated last week
- Talk to the NCBI EUtils☆23Oct 8, 2020Updated 5 years ago
- Gene-flank analysis tool☆37Dec 18, 2024Updated last year
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆24Jun 2, 2021Updated 5 years ago
- This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion☆21Mar 22, 2021Updated 5 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆51Updated this week
- A provenance library for bioinformatics workflows 🧬 🔀 📝☆14Jun 2, 2026Updated last month
- Federating genomes with love (and synteny derived from functional annotations)☆46Jul 15, 2026Updated last week
- ☆12Apr 1, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆18Nov 24, 2025Updated 7 months ago
- A chronological age predictor based on DNA methylation☆22Mar 14, 2024Updated 2 years ago
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆15May 24, 2023Updated 3 years ago
- ☆14Mar 28, 2018Updated 8 years ago
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Mar 29, 2025Updated last year
- Supporting code for the paper "Measuring evolutionary rates of proteins in a structural context"☆15Sep 10, 2018Updated 7 years ago
- Embeddings to Network Alignment - align biological networks between two species☆10Sep 8, 2023Updated 2 years ago
- R package for comparison of synteny conservation at the genome-wide scale.☆16Jun 6, 2024Updated 2 years ago
- Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ra…☆14Sep 15, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆10May 17, 2022Updated 4 years ago
- Processing and analysis of data coming from Illumina sequencing machines☆11Jul 10, 2026Updated last week
- Additional supplementary information and code, data repository for Fellows Yates, J.A. et al. (2021) PNAS. DOI: http://dx.doi.org/10.1073…☆13Oct 20, 2021Updated 4 years ago
- BoostDiff - Inference of differential networks from gene expression data☆13Jan 11, 2024Updated 2 years ago
- ☆11Apr 17, 2023Updated 3 years ago
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Jul 24, 2024Updated last year
- ☆10Mar 5, 2019Updated 7 years ago