HuffordLab / GenomeQC
☆32Updated 4 years ago
Alternatives and similar repositories for GenomeQC
Users that are interested in GenomeQC are comparing it to the libraries listed below
Sorting:
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 2 years ago
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆36Updated last month
- Genome Annotation Pipeline☆35Updated 8 months ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- Dinoflagellate Annotation Workflow☆14Updated 2 years ago
- Multi-genome synteny block visualization tool☆37Updated 3 months ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆40Updated 3 months ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆26Updated last month
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- Chromosome-level synteny plotting using orthologous regions☆29Updated 7 months ago
- TGS scaffolding☆46Updated 3 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 4 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- meta-pipeline for repetitive element de-fragmentation and annotation☆24Updated 4 years ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆27Updated 3 years ago
- Computational Analysis of Gene Expression Evolution☆40Updated last month
- Improved Phased Assembler☆28Updated 3 years ago
- A tool for evaluate long-read de novo assembly results☆46Updated 8 months ago
- ☆19Updated 2 years ago
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆19Updated 4 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- Convergent substitution detection tool based on the PCOC model☆30Updated 3 years ago
- Toolkit for evolutionary analyses of linkage groups☆31Updated 9 months ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆33Updated 3 months ago