HuffordLab / GenomeQC
☆32Updated 4 years ago
Alternatives and similar repositories for GenomeQC:
Users that are interested in GenomeQC are comparing it to the libraries listed below
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆36Updated 2 weeks ago
- Chromosome-level synteny plotting using orthologous regions☆29Updated 7 months ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- Genome Annotation Pipeline☆35Updated 8 months ago
- A genome assembly assessment pipeline.☆37Updated last year
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- Multi-genome synteny block visualization tool☆33Updated 3 months ago
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 4 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- A tool for evaluate long-read de novo assembly results☆44Updated 7 months ago
- scripts to parse and analyse MCScanX collinearity output☆31Updated 5 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆40Updated 3 months ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- Python wrappers for programs that search for transposable elements☆19Updated 8 years ago
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆19Updated 4 years ago
- ☆42Updated 11 months ago
- Automatic evaluation of HGTs☆28Updated 2 months ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆31Updated 6 months ago
- Yet another Hi-C scaffolding tool☆19Updated 6 months ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆33Updated 2 months ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆20Updated 9 months ago
- ☆43Updated 8 years ago