Alternatives and similar repositories for figtree:

Users that are interested in figtree are comparing it to the libraries listed below

• mmatschiner / tutorials
  Tutorials on phylogenetic and phylogenomic inference
  ☆378Updated last year
• iqtree / iqtree2
  IQ-TREE software version 2: phylogenetics by maximum likelihood
  ☆275Updated last week
• edgardomortiz / vcf2phylip
  Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
  ☆307Updated last year
• stamatak / standard-RAxML
  ☆337Updated 3 weeks ago
• Kinggerm / GetOrganelle
  Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)
  ☆320Updated last month
• mummer4 / mummer
  Mummer alignment tool
  ☆492Updated last month
• ParBLiSS / FastANI
  Fast Whole-Genome Similarity (ANI) Estimation
  ☆397Updated last year
• amkozlov / raxml-ng
  RAxML Next Generation: faster, easier-to-use and more flexible
  ☆413Updated last month
• rrwick / Unicycler
  hybrid assembly pipeline for bacterial genomes
  ☆586Updated 8 months ago
• eggnogdb / eggnog-mapper
  Fast genome-wide functional annotation through orthology assignment
  ☆603Updated 10 months ago
• jtamames / SqueezeMeta
  A complete pipeline for metagenomic analysis
  ☆401Updated this week
• ncbi / pgap
  NCBI Prokaryotic Genome Annotation Pipeline
  ☆331Updated this week
• mothur / mothur
  Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Imm…
  ☆271Updated 2 months ago
• fbreitwieser / pavian
  🌈 Interactive analysis of metagenomics data
  ☆411Updated 6 months ago
• Gaius-Augustus / Augustus
  Genome annotation with AUGUSTUS
  ☆296Updated 2 months ago
• davidemms / OrthoFinder
  Phylogenetic orthology inference for comparative genomics
  ☆747Updated 5 months ago
• shenwei356 / taxonkit
  A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV
  ☆405Updated 3 weeks ago
• marbl / Krona
  Interactively explore metagenomes and more from a web browser.
  ☆467Updated 3 years ago
• sanger-pathogens / Roary
  Rapid large-scale prokaryote pan genome analysis
  ☆339Updated 2 years ago
• arpcard / rgi
  Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…
  ☆356Updated last week
• Ecogenomics / CheckM
  Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
  ☆363Updated 7 months ago
• oschwengers / bakta
  Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
  ☆493Updated 3 weeks ago
• jenniferlu717 / Bracken
  Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…
  ☆305Updated last month
• wyp1125 / MCScanX
  MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!
  ☆253Updated 3 months ago
• Gaius-Augustus / BRAKER
  BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…
  ☆393Updated 2 months ago
• usadellab / Trimmomatic
  ☆240Updated 10 months ago
• ebi-pf-team / interproscan
  Genome-scale protein function classification
  ☆320Updated this week
• NBISweden / AGAT
  Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/
  ☆493Updated 2 weeks ago
• TransDecoder / TransDecoder
  TransDecoder source
  ☆288Updated 6 months ago
• Nextomics / NextDenovo
  Fast and accurate de novo assembler for long reads
  ☆384Updated 10 months ago