PhyML -- Phylogenetic estimation using (Maximum) Likelihood
☆195Sep 9, 2025Updated 6 months ago
Alternatives and similar repositories for phyml
Users that are interested in phyml are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆347Mar 4, 2025Updated last year
- Automatically exported from code.google.com/p/figtree☆460Updated this week
- Ancestral character reconstruction and visualisation for rooted phylogenetic trees☆38Mar 12, 2026Updated last week
- Bayesian Evolutionary Analysis Sampling Trees☆239Updated this week
- MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentati…☆259Jan 9, 2026Updated 2 months ago
- A phylogeny dating method using least-squares algorithms and criteria☆32Oct 25, 2024Updated last year
- Efficient phylogenomic software by maximum likelihood☆204Nov 4, 2021Updated 4 years ago
- RAxML Next Generation: faster, easier-to-use and more flexible☆457Updated this week
- Automatically exported from code.google.com/p/jmodeltest2☆83Sep 26, 2021Updated 4 years ago
- Scalable relaxed clock phylogenetic dating☆28Sep 3, 2025Updated 6 months ago
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆12Sep 26, 2017Updated 8 years ago
- Bayesian Evolutionary Analysis by Sampling Trees☆268Jan 22, 2026Updated 2 months ago
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆250Updated this week
- Visualization and annotation of phylogenetic trees☆922Updated this week
- ☆38Apr 14, 2022Updated 3 years ago
- Automatically exported from code.google.com/p/prottest3☆37Jan 22, 2018Updated 8 years ago
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆16Apr 14, 2023Updated 2 years ago
- Phylogenetic tree library for JavaScript/Node.js☆39Nov 16, 2022Updated 3 years ago
- general purpose library for evaluating the likelihood of sequence evolution on trees☆144Mar 7, 2026Updated 2 weeks ago
- Bayesian co-estimation of phylogenies and multiple alignments via MCMC☆49Updated this week
- Accelerated BLAST compatible local sequence aligner.☆1,256Mar 7, 2026Updated 2 weeks ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- ☆229Feb 25, 2026Updated 3 weeks ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆121May 21, 2024Updated last year
- ☆12May 12, 2019Updated 6 years ago
- MMseqs2: ultra fast and sensitive search and clustering suite☆2,005Mar 9, 2026Updated last week
- Hybrid Assembler for Plasmids☆10Jul 28, 2022Updated 3 years ago
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆253Updated this week
- ☆11Feb 9, 2025Updated last year
- A Python library for phylogenetic scripting, simulation, data processing and manipulation.☆233Jan 8, 2026Updated 2 months ago
- HMMER: biological sequence analysis using profile HMMs☆403Feb 16, 2026Updated last month
- Calculate summary statistics and manipulate multiple sequence alignments☆91Jan 28, 2026Updated last month
- Virus Protein Family tools☆31Jul 20, 2022Updated 3 years ago
- SPAdes Genome Assembler☆919Updated this week
- Bayesian analysis of genomic sequence data under the multispecies coalescent model☆112Updated this week
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆121Aug 21, 2023Updated 2 years ago
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆203Aug 25, 2025Updated 6 months ago
- IQ-TREE software version 2: phylogenetics by maximum likelihood☆325Mar 12, 2026Updated last week
- Fast genome analysis from unassembled short reads☆317Apr 8, 2024Updated last year