PhyML -- Phylogenetic estimation using (Maximum) Likelihood
☆196May 28, 2026Updated 2 weeks ago
Alternatives and similar repositories for phyml
Users that are interested in phyml are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆348Mar 4, 2025Updated last year
- Automatically exported from code.google.com/p/figtree☆472May 17, 2026Updated 3 weeks ago
- Ancestral character reconstruction and visualisation for rooted phylogenetic trees☆40Apr 17, 2026Updated last month
- Bayesian Evolutionary Analysis Sampling Trees☆245Updated this week
- MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentati…☆269Jan 9, 2026Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A phylogeny dating method using least-squares algorithms and criteria☆32Oct 25, 2024Updated last year
- Efficient phylogenomic software by maximum likelihood☆210Nov 4, 2021Updated 4 years ago
- RAxML Next Generation: faster, easier-to-use and more flexible☆466May 29, 2026Updated last week
- Scalable relaxed clock phylogenetic dating☆27Sep 3, 2025Updated 9 months ago
- Automatically exported from code.google.com/p/jmodeltest2☆83Sep 26, 2021Updated 4 years ago
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆13Sep 26, 2017Updated 8 years ago
- Bayesian Evolutionary Analysis by Sampling Trees☆276Mar 27, 2026Updated 2 months ago
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆252Updated this week
- Visualization and annotation of phylogenetic trees☆926Apr 29, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆38Apr 14, 2022Updated 4 years ago
- Automatically exported from code.google.com/p/prottest3☆37Jan 22, 2018Updated 8 years ago
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆15Apr 14, 2023Updated 3 years ago
- Phylogenetic tree library for JavaScript/Node.js☆39Nov 16, 2022Updated 3 years ago
- general purpose library for evaluating the likelihood of sequence evolution on trees☆146Updated this week
- Bayesian co-estimation of phylogenies and multiple alignments via MCMC☆50Updated this week
- Accelerated BLAST compatible local sequence aligner.☆1,301Updated this week
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- ☆232May 10, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆123Jun 2, 2026Updated last week
- ☆12May 12, 2019Updated 7 years ago
- Hybrid Assembler for Plasmids☆10Jul 28, 2022Updated 3 years ago
- MMseqs2: ultra fast and sensitive search and clustering suite☆2,078Updated this week
- A Python library for phylogenetic scripting, simulation, data processing and manipulation.☆236May 20, 2026Updated 3 weeks ago
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆262Updated this week
- HMMER: biological sequence analysis using profile HMMs☆414May 30, 2026Updated last week
- Calculate summary statistics and manipulate multiple sequence alignments☆96Jan 28, 2026Updated 4 months ago
- Virus Protein Family tools☆31Jul 20, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆12Feb 9, 2025Updated last year
- SPAdes Genome Assembler☆939Jun 3, 2026Updated last week
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆207Aug 25, 2025Updated 9 months ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆121Aug 21, 2023Updated 2 years ago
- Bayesian analysis of genomic sequence data under the multispecies coalescent model☆113May 26, 2026Updated 2 weeks ago
- IQ-TREE software version 2: phylogenetics by maximum likelihood☆330Mar 12, 2026Updated 3 months ago
- VAPiD: Viral Annotation and Identification Pipeline☆57May 29, 2024Updated 2 years ago