stephaneguindon / phymlLinks
PhyML -- Phylogenetic estimation using (Maximum) Likelihood
☆193Updated 3 months ago
Alternatives and similar repositories for phyml
Users that are interested in phyml are comparing it to the libraries listed below
Sorting:
- Software for aligning viewing and editing dna/aminoacid sequences, intuitive, fast and lightweight. Download and website:☆146Updated 2 weeks ago
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆243Updated this week
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆248Updated 3 weeks ago
- A user-friendly workflow for phylogenomics☆224Updated 3 weeks ago
- breseq is a computational pipeline for finding mutations relative to a reference sequence using high-throughput DNA resequencing data. It…☆173Updated last month
- HyPhy: Hypothesis testing using Phylogenies☆247Updated this week
- A sequencing simulator☆217Updated 6 months ago
- Download files from NCBI Entrez by accession☆132Updated last year
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆201Updated 4 months ago
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆201Updated 2 weeks ago
- ☆345Updated 10 months ago
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆114Updated 2 weeks ago
- V-pipe is a pipeline designed for analysing NGS data of short viral genomes☆144Updated last month
- CAMISIM: Simulating metagenomes and microbial communities☆220Updated 3 weeks ago
- IQ-TREE software version 2: phylogenetics by maximum likelihood☆320Updated 8 months ago
- Bacterial ribosomal RNA predictor☆267Updated last week
- antiSMASH☆238Updated last month
- PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. Please report only **techni…☆179Updated 3 weeks ago
- PAired-eND Assembler for DNA sequences☆137Updated 5 years ago
- Build a partitioned pangenome graph from microbial genomes☆290Updated 3 weeks ago
- Open-source usearch☆127Updated 4 months ago
- A tool to circularize genome assemblies☆250Updated last year
- 🐞 Convert NCBI taxonomy dump into lineages☆150Updated 3 months ago
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆182Updated 3 months ago
- Classifier for metagenomic sequences☆270Updated 6 months ago
- NCBI Prokaryotic Genome Annotation Pipeline☆362Updated last month
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆155Updated 8 months ago
- motus - a tool for marker gene-based OTU (mOTU) profiling☆166Updated 3 weeks ago
- Pipeline for metabolic annotation of microbial genomes☆150Updated 9 months ago
- ☆133Updated last year