iqtree / iqtree3Links
IQ-TREE version 3: software for phylogenetics
☆70Updated last month
Alternatives and similar repositories for iqtree3
Users that are interested in iqtree3 are comparing it to the libraries listed below
Sorting:
- Python tool to reduce size and redundancy of phylogenetic datasets☆45Updated 2 years ago
- ☆75Updated this week
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆89Updated 3 months ago
- UFCG: Universal Fungal Core Genes☆34Updated last month
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆75Updated 2 months ago
- a python package for automated generation of phylogenetic trees from genbank files☆22Updated 6 months ago
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆74Updated last month
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆49Updated last week
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated last month
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆60Updated 5 months ago
- FastOMA is a scalable software package to infer orthology relationship.☆82Updated 2 weeks ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated last year
- Precise host read removal☆103Updated 2 weeks ago
- A toolkit for prokaryotic comparative genomics☆50Updated 7 months ago
- BEAV: Bacterial Element Annotation reVamped☆68Updated last month
- A workflow and scripts for large-scale antiSMASH analyses☆42Updated 5 months ago
- Gene tree - species tree reconciliation from gene tree distributions☆34Updated 3 weeks ago
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 5 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆62Updated 2 weeks ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆85Updated 4 months ago
- Locate antiviral defence systems in prokaryotic genomes☆61Updated 10 months ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆96Updated 2 years ago
- tiara – a tool for DNA sequence classification☆68Updated last year
- CLI tool to annotate genes with KOfam☆86Updated 2 years ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆15Updated 3 years ago
- A python library for predicting phage lifestyle based on genome sequence☆37Updated 2 years ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆64Updated last month
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆71Updated 4 months ago
- ☆72Updated 3 months ago