iqtree / iqtree3Links
IQ-TREE version 3: software for phylogenetics
☆92Updated last week
Alternatives and similar repositories for iqtree3
Users that are interested in iqtree3 are comparing it to the libraries listed below
Sorting:
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 4 months ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆51Updated last week
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆79Updated 2 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆70Updated 2 weeks ago
- ☆80Updated 2 weeks ago
- Python tool to reduce size and redundancy of phylogenetic datasets☆48Updated last week
- BEAV: Bacterial Element Annotation reVamped☆72Updated 3 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆81Updated this week
- Efficient phylogenetic tree inference for massive taxonomic datasets☆135Updated 8 months ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆63Updated last month
- tiara – a tool for DNA sequence classification☆71Updated last year
- Gene tree - species tree reconciliation from gene tree distributions☆35Updated 3 weeks ago
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 4 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated 2 years ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆99Updated 2 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆56Updated 7 months ago
- Precise host read removal☆110Updated 3 months ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆76Updated 7 months ago
- Bacterial GWAS analysis☆46Updated last month
- A toolkit for prokaryotic comparative genomics☆51Updated last month
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- An R package designed for drawing gene arrow maps☆92Updated 2 months ago
- ☆74Updated 6 months ago
- A program for detection of tRNA genes☆75Updated 3 years ago
- CLI tool to annotate genes with KOfam☆85Updated 2 years ago
- IslandPath standalone software☆34Updated 2 years ago
- FastOMA is a scalable software package to infer orthology relationship.☆86Updated this week
- ☆63Updated last year
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆15Updated 4 years ago
- A workflow and scripts for large-scale antiSMASH analyses☆46Updated 8 months ago