iqtree / iqtree3Links
IQ-TREE version 3: software for phylogenetics
☆99Updated last week
Alternatives and similar repositories for iqtree3
Users that are interested in iqtree3 are comparing it to the libraries listed below
Sorting:
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆82Updated 2 weeks ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆45Updated 4 months ago
- ☆76Updated 6 months ago
- ☆81Updated last month
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆70Updated this week
- BEAV: Bacterial Element Annotation reVamped☆72Updated 4 months ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆52Updated 3 weeks ago
- Python tool to reduce size and redundancy of phylogenetic datasets☆48Updated 3 weeks ago
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆79Updated 3 months ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆95Updated 7 months ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆100Updated 2 years ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆57Updated 6 months ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆63Updated 2 weeks ago
- tiara – a tool for DNA sequence classification☆73Updated last year
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 4 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated 2 years ago
- Precise host read removal☆110Updated 3 months ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆76Updated 7 months ago
- Gene tree - species tree reconciliation from gene tree distributions☆37Updated last month
- Bacterial GWAS analysis☆46Updated 2 months ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆68Updated this week
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆55Updated 2 months ago
- ☆50Updated 2 weeks ago
- ☆54Updated 5 months ago
- Implementation of the TreeShrink problem☆53Updated last year
- A toolkit for prokaryotic comparative genomics☆51Updated 2 months ago
- ARG normalization by mapping to the ARO ontology.☆62Updated 4 months ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆82Updated 3 months ago
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆89Updated last year
- GTDB taxonomy taxdump files with trackable TaxIds☆56Updated 7 months ago