etetoolkit / eteLinks
Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.
☆840Updated 2 weeks ago
Alternatives and similar repositories for ete
Users that are interested in ete are comparing it to the libraries listed below
Sorting:
- scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resourc…☆955Updated 2 weeks ago
- A pure-python implementation of the UpSet suite of visualisation methods by Lex, Gehlenborg et al.☆319Updated 7 years ago
- A minimalist tree plotting library using toyplot graphs☆177Updated 4 months ago
- Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…☆843Updated last month
- A Python library for phylogenetic scripting, simulation, data processing and manipulation.☆217Updated last month
- Draw UpSet plots with Matplotlib☆356Updated last year
- DNA plotting library for Python☆297Updated last year
- Efficient pythonic random access to fasta subsequences☆478Updated 2 months ago
- A Python package for exploring and analysing genetic variation data☆297Updated this week
- COBRApy is a package for constraint-based modeling of metabolic networks.☆512Updated last month
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆515Updated this week
- Source of biopython.org website, migrated from MediaWiki☆158Updated last month
- Area-weighted venn-diagrams for Python/matplotlib☆554Updated 5 months ago
- Access to Biological Web Services from Python.☆309Updated 2 weeks ago
- Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl☆397Updated last year
- A fast multi-threaded k-mer counter☆508Updated last year
- NCLS. Basically a static interval-tree that is silly fast for both construction and lookups. Deprecated but maintained.☆223Updated last month
- Python utilities for Cytoscape and Cytoscape.js☆176Updated 3 years ago
- Scripts to download genomes from the NCBI FTP servers☆1,023Updated last week
- Fast, flexible and extensible genome browser.☆329Updated last week
- Incubator for useful bioinformatics code, primarily in Python and R☆626Updated 6 months ago
- A Variant Call Format reader for Python.☆415Updated last year
- Build, share, and embed visualizations of metabolic pathways.☆225Updated 11 months ago
- python Circos☆360Updated last year
- Fast genome and metagenome distance estimation using MinHash☆417Updated last year
- Performant Pythonic GenomicRanges☆481Updated 4 months ago
- Scalable genetics toolkit☆260Updated last month
- Syntax highlighting for computational biology☆266Updated 2 years ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆841Updated this week
- cython + htslib == fast VCF and BCF processing☆407Updated 10 months ago