Alternatives and similar repositories for ete

Users that are interested in ete are comparing it to the libraries listed below

• scikit-bio / scikit-bio
  scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resourc…
  ☆1,101Updated this week
• eaton-lab / toytree
  A minimalist tree plotting library using toyplot graphs
  ☆183Updated 2 weeks ago
• jnothman / UpSetPlot
  Draw UpSet plots with Matplotlib
  ☆373Updated last year
• ImSoErgodic / py-upset
  A pure-python implementation of the UpSet suite of visualisation methods by Lex, Gehlenborg et al.
  ☆322Updated 7 years ago
• pysam-developers / pysam
  Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…
  ☆872Updated this week
• jeetsukumaran / DendroPy
  A Python library for phylogenetic scripting, simulation, data processing and manipulation.
  ☆228Updated 2 weeks ago
• opencobra / cobrapy
  COBRApy is a package for constraint-based modeling of metabolic networks.
  ☆533Updated 3 weeks ago
• mdshw5 / pyfaidx
  Efficient pythonic random access to fasta subsequences
  ☆478Updated 3 months ago
• konstantint / matplotlib-venn
  Area-weighted venn-diagrams for Python/matplotlib
  ☆563Updated 10 months ago
• sourmash-bio / sourmash
  Quickly search, compare, and analyze genomic and metagenomic data sets.
  ☆532Updated this week
• common-workflow-language / cwltool
  Common Workflow Language reference implementation
  ☆361Updated this week
• cggh / scikit-allel
  A Python package for exploring and analysing genetic variation data
  ☆306Updated 3 weeks ago
• biopython / biopython.github.io
  Source of biopython.org website, migrated from MediaWiki
  ☆162Updated last month
• VoigtLab / dnaplotlib
  DNA plotting library for Python
  ☆300Updated last year
• pyranges / ncls
  NCLS. Basically a static interval-tree that is silly fast for both construction and lookups. Deprecated but maintained.
  ☆224Updated 5 months ago
• cokelaer / bioservices
  Access to Biological Web Services from Python.
  ☆325Updated 3 weeks ago
• jamescasbon / PyVCF
  A Variant Call Format reader for Python.
  ☆418Updated 2 years ago
• openvax / pyensembl
  Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl
  ☆396Updated 4 months ago
• DataBiosphere / toil
  A WDL, CWL and Python API supporting easy-to-use workflow engine. It is scalable, efficient and cross-platform (Linux/macOS).
  ☆925Updated last week
• bioSyntax / bioSyntax
  Syntax highlighting for computational biology
  ☆271Updated 2 years ago
• chapmanb / bcbb
  Incubator for useful bioinformatics code, primarily in Python and R
  ☆643Updated 10 months ago
• cytoscape / py2cytoscape
  Python utilities for Cytoscape and Cytoscape.js
  ☆176Updated 3 years ago
• tctianchi / pyvenn
  2 ~ 6 sets venn diagram for python
  ☆349Updated last year
• kblin / ncbi-genome-download
  Scripts to download genomes from the NCBI FTP servers
  ☆1,053Updated 4 months ago
• nextflow-io / awesome-nextflow
  A curated list of nextflow based pipelines
  ☆615Updated 6 months ago
• pyranges / pyranges
  Performant Pythonic GenomicRanges
  ☆492Updated last month
• bcbio / bcbio-nextgen
  Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
  ☆1,023Updated last year
• merenlab / anvio
  An analysis and visualization platform for 'omics data
  ☆490Updated this week
• zakandrewking / escher
  Build, share, and embed visualizations of metabolic pathways.
  ☆230Updated last year
• gmarcais / Jellyfish
  A fast multi-threaded k-mer counter
  ☆525Updated last year