Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.
☆883Jun 1, 2026Updated last month
Alternatives and similar repositories for ete
Users that are interested in ete are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RAxML Next Generation: faster, easier-to-use and more flexible☆473Jul 6, 2026Updated 3 weeks ago
- A Python library for phylogenetic scripting, simulation, data processing and manipulation.☆236Jul 13, 2026Updated 2 weeks ago
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆268Updated this week
- Efficient phylogenomic software by maximum likelihood☆211Nov 4, 2021Updated 4 years ago
- ☆350Mar 4, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆553Updated this week
- A minimalist tree plotting library using toyplot graphs☆199Updated this week
- Phylogenetic orthology inference for comparative genomics☆865Jul 15, 2025Updated last year
- Fast genome-wide functional annotation through orthology assignment☆758May 22, 2026Updated 2 months ago
- HyPhy: Hypothesis testing using Phylogenies☆268Updated this week
- A grammar of graphics for comparative genomics☆774Jul 3, 2026Updated 3 weeks ago
- Accelerated BLAST compatible local sequence aligner.☆1,314Jul 13, 2026Updated 2 weeks ago
- ☆20Feb 13, 2016Updated 10 years ago
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆254Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆476Jul 15, 2026Updated 2 weeks ago
- Visualization and annotation of phylogenetic trees☆930Apr 29, 2026Updated 3 months ago
- Official home of genome aligner based upon notion of Cactus graphs☆697Updated this week
- Genome assembly evaluation tool☆518Jun 10, 2026Updated last month
- Scripts to download genomes from the NCBI FTP servers☆1,082Apr 7, 2026Updated 3 months ago
- IQ-TREE software version 2: phylogenetics by maximum likelihood☆334Jul 22, 2026Updated last week
- Simple phylogenetic tree visualization python package for phylogenetic analysis☆66Sep 14, 2024Updated last year
- scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resourc…☆1,220Updated this week
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆27Mar 25, 2026Updated 4 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,221May 19, 2026Updated 2 months ago
- Toolkit for processing sequences in FASTA/Q formats☆1,550Jun 1, 2025Updated last year
- Accurate Species TRee ALgorithm☆280Apr 1, 2024Updated 2 years ago
- ☆43Apr 2, 2024Updated 2 years ago
- a python package for fast random access to sequences from plain and gzipped FASTA/Q files☆296Jun 10, 2026Updated last month
- An analysis and visualization platform for 'omics data☆533Updated this week
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,401Jul 10, 2026Updated 2 weeks ago
- Rapid prokaryotic genome annotation☆993Jan 6, 2026Updated 6 months ago
- Synteny and Rearrangement Identifier☆480Jul 1, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,583Jul 8, 2026Updated 3 weeks ago
- Fast genome and metagenome distance estimation using MinHash☆448Sep 19, 2025Updated 10 months ago
- Python library to handle Gene Ontology (GO) terms☆900Jul 21, 2026Updated last week
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆189Mar 17, 2026Updated 4 months ago
- 🧬 gget enables efficient querying of genomic reference databases☆1,180Updated this week
- Efficient phylogenetic tree inference for massive taxonomic datasets☆147Apr 6, 2025Updated last year
- A fast approximate aligner for long DNA sequences☆289Oct 11, 2024Updated last year