Alternatives and similar repositories for ete

Users that are interested in ete are comparing it to the libraries listed below

• scikit-bio / scikit-bio
  scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resourc…
  ☆1,153Updated last week
• jnothman / UpSetPlot
  Draw UpSet plots with Matplotlib
  ☆375Updated last year
• eaton-lab / toytree
  A minimalist tree plotting library using toyplot graphs
  ☆187Updated last month
• ImSoErgodic / py-upset
  A pure-python implementation of the UpSet suite of visualisation methods by Lex, Gehlenborg et al.
  ☆323Updated 7 years ago
• pysam-developers / pysam
  Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…
  ☆877Updated this week
• jeetsukumaran / DendroPy
  A Python library for phylogenetic scripting, simulation, data processing and manipulation.
  ☆229Updated last month
• cggh / scikit-allel
  A Python package for exploring and analysing genetic variation data
  ☆312Updated last week
• opencobra / cobrapy
  COBRApy is a package for constraint-based modeling of metabolic networks.
  ☆544Updated 2 months ago
• mdshw5 / pyfaidx
  Efficient pythonic random access to fasta subsequences
  ☆482Updated 5 months ago
• VoigtLab / dnaplotlib
  DNA plotting library for Python
  ☆301Updated last year
• sourmash-bio / sourmash
  Quickly search, compare, and analyze genomic and metagenomic data sets.
  ☆538Updated this week
• cokelaer / bioservices
  Access to Biological Web Services from Python.
  ☆326Updated last month
• openvax / pyensembl
  Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl
  ☆399Updated 5 months ago
• jamescasbon / PyVCF
  A Variant Call Format reader for Python.
  ☆418Updated 2 years ago
• tctianchi / pyvenn
  2 ~ 6 sets venn diagram for python
  ☆351Updated last year
• zakandrewking / escher
  Build, share, and embed visualizations of metabolic pathways.
  ☆232Updated last year
• biopython / biopython.github.io
  Source of biopython.org website, migrated from MediaWiki
  ☆162Updated 3 months ago
• konstantint / matplotlib-venn
  Area-weighted venn-diagrams for Python/matplotlib
  ☆565Updated 11 months ago
• bioSyntax / bioSyntax
  Syntax highlighting for computational biology
  ☆270Updated 2 years ago
• gmarcais / Jellyfish
  A fast multi-threaded k-mer counter
  ☆529Updated last year
• kblin / ncbi-genome-download
  Scripts to download genomes from the NCBI FTP servers
  ☆1,058Updated 6 months ago
• tanghaibao / goatools
  Python library to handle Gene Ontology (GO) terms
  ☆876Updated last month
• cytoscape / py2cytoscape
  Python utilities for Cytoscape and Cytoscape.js
  ☆176Updated 3 years ago
• Edinburgh-Genome-Foundry / DnaFeaturesViewer
  Python library to plot DNA sequence features (e.g. from Genbank files)
  ☆679Updated 7 months ago
• chapmanb / bcbb
  Incubator for useful bioinformatics code, primarily in Python and R
  ☆645Updated last year
• ponnhide / pyCircos
  python Circos
  ☆372Updated last year
• pydna-group / pydna
  Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…
  ☆215Updated this week
• pyranges / ncls
  NCLS. Basically a static interval-tree that is silly fast for both construction and lookups. Deprecated but maintained.
  ☆224Updated 7 months ago
• pyranges / pyranges
  Performant Pythonic GenomicRanges
  ☆493Updated last week
• torognes / vsearch
  Versatile open-source tool for microbiome analysis
  ☆735Updated 2 weeks ago