Cibiv / IQ-TREELinks
Efficient phylogenomic software by maximum likelihood
☆203Updated 3 years ago
Alternatives and similar repositories for IQ-TREE
Users that are interested in IQ-TREE are comparing it to the libraries listed below
Sorting:
- A user-friendly workflow for phylogenomics☆221Updated 2 months ago
- Convert various sequence formats to FASTA☆138Updated 3 years ago
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆203Updated last month
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆205Updated last year
- BSR-Based Allele Calling Algorithm☆148Updated 3 weeks ago
- A tool to circularize genome assemblies☆248Updated last year
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆239Updated last year
- ☆263Updated 3 months ago
- Bacterial ribosomal RNA predictor☆256Updated 2 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆333Updated last month
- Tool to plot synteny and structural rearrangements between genomes☆324Updated 6 months ago
- snipit: summarise snps relative to your reference sequence☆162Updated 3 weeks ago
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆165Updated this week
- Quality control for MinION sequencing data☆215Updated 2 years ago
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆118Updated 4 years ago
- Classifier for metagenomic sequences☆266Updated 3 months ago
- Pan-genome wide association studies☆204Updated last year
- Pairwise SNP distance matrix from a FASTA sequence alignment☆141Updated last year
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 4 years ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆237Updated 2 years ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Updated 4 years ago
- An updated pipeline for pangenome investigation☆316Updated 7 months ago
- Finds SNP sites from a multi-FASTA alignment file☆266Updated 4 years ago
- Kraken taxonomic sequence classification system☆216Updated 4 years ago
- Processing pipeline for pan-genome visulization and exploration☆140Updated 2 years ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆130Updated 11 months ago
- A robust, extensible metagenomics pipeline☆174Updated this week
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆321Updated 7 months ago
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆226Updated this week
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆254Updated 3 months ago