Cibiv / IQ-TREELinks
Efficient phylogenomic software by maximum likelihood
☆205Updated 4 years ago
Alternatives and similar repositories for IQ-TREE
Users that are interested in IQ-TREE are comparing it to the libraries listed below
Sorting:
- BSR-Based Allele Calling Algorithm☆148Updated 3 weeks ago
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆210Updated 5 months ago
- Quality control for MinION sequencing data☆216Updated 3 years ago
- Bacterial ribosomal RNA predictor☆276Updated 3 weeks ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆207Updated last year
- A user-friendly workflow for phylogenomics☆225Updated this week
- Convert various sequence formats to FASTA☆146Updated last month
- A tool to circularize genome assemblies☆250Updated last year
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆243Updated 2 years ago
- Classifier for metagenomic sequences☆269Updated 7 months ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆151Updated last month
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆250Updated last month
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Updated 4 years ago
- ☆270Updated 7 months ago
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆119Updated 4 years ago
- ☆231Updated last year
- snipit: summarise snps relative to your reference sequence☆166Updated 2 weeks ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆134Updated last year
- Get assembly statistics from FASTA and FASTQ files☆124Updated 2 years ago
- An updated pipeline for pangenome investigation☆336Updated 2 weeks ago
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆199Updated 4 months ago
- Tool to plot synteny and structural rearrangements between genomes☆337Updated 9 months ago
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆176Updated this week
- Foreign Contamination Screening caller scripts and documentation☆156Updated 10 months ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆123Updated 3 weeks ago
- Pan-genome wide association studies☆205Updated last year
- Processing pipeline for pan-genome visulization and exploration☆143Updated 2 years ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆285Updated 3 months ago
- Finds SNP sites from a multi-FASTA alignment file☆272Updated 5 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆339Updated 4 months ago