Best-fit model selection
☆88Mar 21, 2024Updated 2 years ago
Alternatives and similar repositories for modeltest
Users that are interested in modeltest are comparing it to the libraries listed below
Sorting:
- RAxML Next Generation: faster, easier-to-use and more flexible☆457Updated this week
- Automatically exported from code.google.com/p/jmodeltest2☆83Sep 26, 2021Updated 4 years ago
- PartitionFinder discovers optimal partitioning schemes for DNA sequences.☆71Mar 10, 2021Updated 5 years ago
- Automatically exported from code.google.com/p/prottest3☆37Jan 22, 2018Updated 8 years ago
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆11Sep 29, 2014Updated 11 years ago
- Fast, accurate species tree estimation.☆12Aug 29, 2024Updated last year
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 5 years ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆51Mar 4, 2024Updated 2 years ago
- Phylogenetic penalized likelihood☆54Jun 27, 2025Updated 8 months ago
- Bayesian molecular clock dating tutorial with genome-scale datasets☆19Dec 4, 2021Updated 4 years ago
- ☆21Dec 30, 2025Updated 2 months ago
- ☆37Nov 30, 2023Updated 2 years ago
- ☆78Jun 2, 2025Updated 9 months ago
- Phylogenetic tools for Eco-phylogenetics☆14Oct 10, 2024Updated last year
- HyPhy: Hypothesis testing using Phylogenies☆250Feb 27, 2026Updated 3 weeks ago
- ☆16Feb 20, 2024Updated 2 years ago
- ☆22Dec 9, 2025Updated 3 months ago
- ☆15Oct 9, 2025Updated 5 months ago
- Bayesian analysis of genomic sequence data under the multispecies coalescent model☆112Updated this week
- A program for divvying or partially filtering multiple sequence alignments☆27Oct 14, 2019Updated 6 years ago
- Hybridization detection using phylogenetic invariants☆52Oct 29, 2024Updated last year
- general purpose library for evaluating the likelihood of sequence evolution on trees☆144Mar 7, 2026Updated 2 weeks ago
- IQ-TREE software version 2: phylogenetics by maximum likelihood☆325Mar 12, 2026Updated last week
- Automatically exported from code.google.com/p/densitree☆29Jul 27, 2025Updated 7 months ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Mar 28, 2017Updated 8 years ago
- PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. Please report only **techni…☆185Jan 29, 2026Updated last month
- Package for species delimitation analysis☆11Jan 7, 2025Updated last year
- MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentati…☆259Jan 9, 2026Updated 2 months ago
- Pipeline for generate Ks plots of transcriptome data.☆12Dec 27, 2017Updated 8 years ago
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆11Jun 19, 2025Updated 9 months ago
- Sorting and subsampling phylogenomic datasets☆30Apr 9, 2025Updated 11 months ago
- A library for working with phylogenetic and population genetic data.☆66Feb 9, 2026Updated last month
- PAGAN2 multiple sequence aligner☆12Jul 2, 2024Updated last year
- mPTP - a tool for single-locus species delimitation☆30Mar 14, 2026Updated last week
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆229Jan 4, 2026Updated 2 months ago
- PhyloSuite is an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogeneti…☆169Feb 16, 2026Updated last month
- This repository contains R code for building a heatmap and histogram with the output of FastANI☆18Sep 14, 2021Updated 4 years ago
- pre-process illumina reads☆19Oct 27, 2022Updated 3 years ago
- ☆347Mar 4, 2025Updated last year