Best-fit model selection
☆87Mar 21, 2024Updated last year
Alternatives and similar repositories for modeltest
Users that are interested in modeltest are comparing it to the libraries listed below
Sorting:
- RAxML Next Generation: faster, easier-to-use and more flexible☆452Feb 23, 2026Updated last week
- PartitionFinder discovers optimal partitioning schemes for DNA sequences.☆71Mar 10, 2021Updated 4 years ago
- Automatically exported from code.google.com/p/jmodeltest2☆83Sep 26, 2021Updated 4 years ago
- Automatically exported from code.google.com/p/prottest3☆37Jan 22, 2018Updated 8 years ago
- Phylogenetic tools for Eco-phylogenetics☆14Oct 10, 2024Updated last year
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆11Sep 29, 2014Updated 11 years ago
- ☆21Dec 30, 2025Updated 2 months ago
- Fast, accurate species tree estimation.☆12Aug 29, 2024Updated last year
- Phylogenetic penalized likelihood☆54Jun 27, 2025Updated 8 months ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆51Mar 4, 2024Updated last year
- A program for divvying or partially filtering multiple sequence alignments☆27Oct 14, 2019Updated 6 years ago
- ☆77Jun 2, 2025Updated 9 months ago
- HyPhy: Hypothesis testing using Phylogenies☆251Updated this week
- Sorting and subsampling phylogenomic datasets☆28Apr 9, 2025Updated 10 months ago
- Automatically exported from code.google.com/p/densitree☆29Jul 27, 2025Updated 7 months ago
- Bayesian analysis of genomic sequence data under the multispecies coalescent model☆111Feb 17, 2026Updated last week
- ☆16Feb 20, 2024Updated 2 years ago
- Package for species delimitation analysis☆11Jan 7, 2025Updated last year
- Linear-time de novo Long Read Assembler☆41Oct 22, 2025Updated 4 months ago
- Bayesian molecular clock dating tutorial with genome-scale datasets☆19Dec 4, 2021Updated 4 years ago
- BOSTIn is a new, user-friendly phylogenetic artifact identification package.☆11Jan 20, 2026Updated last month
- general purpose library for evaluating the likelihood of sequence evolution on trees☆143Feb 10, 2026Updated 2 weeks ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Oct 27, 2020Updated 5 years ago
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 5 years ago
- The MafFilter genome alignment processor☆19Jan 6, 2026Updated last month
- PhyloSuite is an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogeneti…☆167Feb 16, 2026Updated 2 weeks ago
- A library for working with phylogenetic and population genetic data.☆66Feb 9, 2026Updated 3 weeks ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆203Nov 23, 2025Updated 3 months ago
- Within-species genome-wide dN/dS estimation from very many genomes☆23Oct 26, 2020Updated 5 years ago
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆22Aug 8, 2023Updated 2 years ago
- A tool to root phylogenies☆23Sep 5, 2024Updated last year
- Dendroscope program for analyzing and visualizing rooted phylogenetic trees and networks☆47Apr 28, 2025Updated 10 months ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Sep 27, 2019Updated 6 years ago
- Assort phage protein sequences into phamilies using MMseqs2☆11Dec 16, 2024Updated last year
- PAGAN2 multiple sequence aligner☆12Jul 2, 2024Updated last year
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆11Jun 19, 2025Updated 8 months ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆16Jan 12, 2026Updated last month
- IQ-TREE software version 2: phylogenetics by maximum likelihood☆325Apr 29, 2025Updated 10 months ago
- PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. Please report only **techni…☆184Jan 29, 2026Updated last month