ddarriba / modeltestLinks
Best-fit model selection
☆85Updated last year
Alternatives and similar repositories for modeltest
Users that are interested in modeltest are comparing it to the libraries listed below
Sorting:
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆121Updated last week
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆117Updated last year
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆88Updated 2 years ago
- Massively parallel phylogenetic placement of genetic sequences☆86Updated 3 years ago
- Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file☆73Updated last year
- A toolbox for comparative genomics.☆107Updated 4 years ago
- Making whole bacterial genome sequencing data analysis easy☆114Updated 7 months ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆145Updated last week
- Automatically exported from code.google.com/p/jmodeltest2☆82Updated 4 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆79Updated 2 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆60Updated last year
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆106Updated 10 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- A toolbox for pangenome analysis and threshold evaluation.☆101Updated 3 years ago
- Foreign Contamination Screening caller scripts and documentation☆151Updated 8 months ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆75Updated last year
- ☆74Updated 6 months ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆119Updated 2 years ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆72Updated last year
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆93Updated 4 months ago
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆99Updated 7 months ago
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆140Updated 2 years ago
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆113Updated 2 years ago
- Using ggtree to build phylogenetic trees☆50Updated last year
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆145Updated 3 months ago
- ☆74Updated last week
- DDBJ Fast Annotation and Submission Tool☆83Updated 3 months ago
- CLI tool to annotate genes with KOfam☆85Updated 2 years ago
- REference Sequence annotation and CuRatIon Pipeline☆97Updated last month
- Recovering genes from targeted sequence capture data☆130Updated 5 months ago