BenoitMorel / ParGenes
A massively parallel tool for model selection and tree inference on thousands of genes
☆47Updated last year
Alternatives and similar repositories for ParGenes:
Users that are interested in ParGenes are comparing it to the libraries listed below
- Automated de novo assembly of whole chloroplast genomes.☆45Updated 7 months ago
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆36Updated 11 months ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆34Updated last year
- ☆39Updated last year
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆21Updated last year
- Tutorial about R package PopGenome☆41Updated 6 years ago
- Alignment-Based Sequence extraction☆15Updated 3 years ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆34Updated last year
- ☆18Updated 4 years ago
- Synteny Imager☆61Updated 7 months ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Updated 4 years ago
- Implementation of the TreeShrink problem☆40Updated 7 months ago
- A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local seq…☆42Updated 11 months ago
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆65Updated 6 months ago
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆34Updated 10 months ago
- Detecting natural selection from population-based genetic data☆27Updated 6 years ago
- ☆22Updated 11 years ago
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆14Updated 3 months ago
- ☆71Updated last month
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆33Updated 2 months ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated 3 weeks ago
- Generates an NCBI .tbl file of annotations on a genome.☆66Updated 7 years ago
- SambaR: Snp datA Management and Basic Analyses in R☆28Updated last week
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆58Updated 5 months ago
- HybSeq Target Capture of 353 Protein Coding Genes in Any Angiosperm☆18Updated 2 years ago
- biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute☆49Updated 2 months ago
- PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datas…☆31Updated last month
- Scripts for file processing and analysis in phylogenetics and phylogeography☆11Updated 4 years ago