BenoitMorel / ParGenesLinks
A massively parallel tool for model selection and tree inference on thousands of genes
☆49Updated last year
Alternatives and similar repositories for ParGenes
Users that are interested in ParGenes are comparing it to the libraries listed below
Sorting:
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆36Updated last year
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆34Updated last year
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- Automated de novo assembly of whole chloroplast genomes.☆46Updated 9 months ago
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆21Updated 2 years ago
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆37Updated last year
- ☆40Updated last year
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆20Updated 4 years ago
- Interim data for the Darwin Tree of Life Project☆33Updated 5 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆71Updated 8 months ago
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆16Updated 5 months ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Updated 4 years ago
- ☆74Updated 3 months ago
- Synteny Imager☆63Updated 10 months ago
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆73Updated last week
- Tutorial about R package PopGenome☆41Updated 6 years ago
- Alignment-Based Sequence extraction☆15Updated 3 years ago
- Detecting natural selection from population-based genetic data☆27Updated 6 years ago
- spruceup☆24Updated 10 months ago
- Implementation of the TreeShrink problem☆45Updated 9 months ago
- ☆18Updated 4 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- Scripts for file processing and analysis in phylogenetics and phylogeography☆13Updated 4 years ago
- A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local seq…☆42Updated last year
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆59Updated 8 months ago
- HyPhy standalone analyses☆44Updated 2 months ago
- Using ggtree to build phylogenetic trees☆47Updated 7 months ago