BenoitMorel / ParGenesLinks
A massively parallel tool for model selection and tree inference on thousands of genes
☆50Updated last year
Alternatives and similar repositories for ParGenes
Users that are interested in ParGenes are comparing it to the libraries listed below
Sorting:
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆35Updated 2 years ago
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆36Updated last year
- Automated de novo assembly of whole chloroplast genomes.☆47Updated last year
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆76Updated last month
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 9 months ago
- A statistical framework for ploidy estimation using NGS short-read data☆62Updated 7 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- ☆33Updated 4 years ago
- Multi-genome synteny block visualization tool☆47Updated last month
- Synteny Imager☆65Updated 2 weeks ago
- orthology assignment using phylogenetic and network analyses☆49Updated 3 weeks ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated 2 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- tools for assessing the accuracy of genome assemblies☆35Updated last year
- A tool to infer species tree and phylogenetic network from multilocus data☆32Updated 5 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- TSEBRA: Transcript Selector for BRAKER☆48Updated this week
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆20Updated 4 years ago
- Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file☆73Updated last year
- Visualize whole genome alignments as linear maps☆73Updated 3 months ago
- Microbial Populations as Clusters Of Gene Transfer☆44Updated last year
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- HyPhy standalone analyses☆48Updated 2 months ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆75Updated 4 years ago
- ☆53Updated 4 years ago
- k-mer learning materials☆80Updated 9 months ago