alyssafrazee / polyesterLinks
Bioconductor package "polyester", devel version. RNA-seq read simulator.
☆94Updated 3 years ago
Alternatives and similar repositories for polyester
Users that are interested in polyester are comparing it to the libraries listed below
Sorting:
- Transcript quantification import for modular pipelines☆138Updated last year
- Battenberg algorithm and associated implementation script☆53Updated 4 years ago
- A pipeline for differential expression and differential alternative splicing analysis☆67Updated last year
- R package for bcbio RNA-seq analysis.☆62Updated 9 months ago
- Tip and tricks for BAM files☆85Updated 6 years ago
- ☆78Updated 11 years ago
- Quality of RNA-Seq Toolset☆53Updated 6 years ago
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- Transcript quantification import with automatic metadata detection☆68Updated last month
- R package for genomic feature analysis and visualization☆79Updated 2 months ago
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- csf fork of fastqc for usage on selected reads of unaligned bam file☆49Updated 12 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- A tool for bigWig files.☆119Updated 7 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- BigWig and BAM utilities☆96Updated last year
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆93Updated 7 years ago
- ☆71Updated 3 years ago
- An R package for inferring the subclonal architecture of tumors☆121Updated last year
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 4 years ago
- ☆82Updated 3 years ago
- Materials for Spring 2018 Applied Genomics Course☆79Updated 6 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 9 years ago
- Exon-exon splice junctions across SRA☆41Updated 3 years ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 7 months ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 6 years ago
- ☆49Updated 4 years ago
- integrated RNA-seq Analysis Pipeline☆84Updated 6 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago