alyssafrazee / polyesterLinks
Bioconductor package "polyester", devel version. RNA-seq read simulator.
☆94Updated 3 years ago
Alternatives and similar repositories for polyester
Users that are interested in polyester are comparing it to the libraries listed below
Sorting:
- A tool for bigWig files.☆119Updated 7 years ago
- Transcript quantification import for modular pipelines☆138Updated last year
- Battenberg algorithm and associated implementation script☆52Updated 4 years ago
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- ☆78Updated 11 years ago
- R package for bcbio RNA-seq analysis.☆62Updated 8 months ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 6 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 4 years ago
- RNA-seq Quantification of Alternative Polyadenylation☆46Updated last year
- Relevant papers for CNV and SV approaches☆94Updated 7 months ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- Quality of RNA-Seq Toolset☆53Updated 6 years ago
- An R package for inferring the subclonal architecture of tumors☆119Updated last year
- Unsorted scripts for bioinformatics☆61Updated 3 years ago
- Exon-exon splice junctions across SRA☆40Updated 3 years ago
- A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, …☆61Updated 6 years ago
- Tip and tricks for BAM files☆85Updated 6 years ago
- Galaxy RNA workbench☆40Updated 4 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆81Updated 4 months ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆90Updated 4 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆70Updated 4 months ago
- ☆70Updated 3 years ago
- integrated RNA-seq Analysis Pipeline☆84Updated 6 years ago
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated 2 years ago
- R package for genomic feature analysis and visualization☆78Updated last month
- HMMRATAC peak caller for ATAC-seq data☆100Updated 6 months ago