Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources
☆34Oct 27, 2021Updated 5 years ago
Alternatives and similar repositories for wdlRunR
Users that are interested in wdlRunR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A port of the matrixStats API to work with DelayedMatrix objects from the DelayedArray package☆15May 8, 2026Updated 5 months ago
- Detection of super-enhancers in cancer data☆22Apr 10, 2023Updated 3 years ago
- ☆10Jan 8, 2018Updated 8 years ago
- Reproducible Workflows, curated at the Fred Hutch☆12Jan 21, 2026Updated 9 months ago
- Computable build reports, package metadata, and download stats from the Bioconductor project☆23Oct 16, 2026Updated 2 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆10Oct 21, 2019Updated 7 years ago
- R bindings to IPFS☆11Mar 23, 2017Updated 9 years ago
- Reproducible GSEA Benchmarking☆14May 14, 2026Updated 5 months ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Nov 26, 2025Updated 11 months ago
- Build and maintain multiple custom conda environments all in one place.☆40Dec 3, 2024Updated last year
- 🧲 Multi-step adaptive estimation for reducing false positive selection in sparse regressions☆13Jul 21, 2024Updated 2 years ago
- Quick Generalized Full Matching in R☆11Nov 29, 2023Updated 2 years ago
- Develop and host GitHub actions for Bioconductor☆11Apr 22, 2021Updated 5 years ago
- R package to do enrichment analysis for neoantigens☆13Feb 21, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Bioconductor package for management of multi-assay data☆76Oct 26, 2026Updated last week
- cancereffectsizeR: An R package for calculation of somatic mutation rates and quantification of selection in cancer☆20Oct 6, 2026Updated 3 weeks ago
- Helper script for bioconductor/bioconductor_docker☆13May 19, 2026Updated 5 months ago
- Allele frequency filtering for Mendelian variant discovery☆18Sep 27, 2016Updated 10 years ago
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆109Aug 1, 2023Updated 3 years ago
- Explore the cancer relevance of your gene list☆55Aug 11, 2026Updated 2 months ago
- single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.☆21Jan 22, 2026Updated 9 months ago
- List of computational resources for analyzing microbial sequencing data.☆66Nov 18, 2025Updated 11 months ago
- Human transcription factor target genes from 6 databases in convenient R format.☆89Oct 4, 2018Updated 8 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Amazon Web Services Bundle Package☆15Jan 12, 2020Updated 6 years ago
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆23Apr 30, 2026Updated 6 months ago
- RNA-Seq Snakemake example with Jekyll homepage creation☆20Feb 20, 2014Updated 12 years ago
- Interface to 10x Genomics' 1.3 m single cell data set☆19Aug 2, 2018Updated 8 years ago
- ClusterMap is an R package to analyze and compare two or more single cell expression datasets.☆22Jan 17, 2023Updated 3 years ago
- Tidy Verbs for Dealing with Genomic Data Frames https://const-ae.github.io/tidygenomics/☆106Jan 12, 2026Updated 9 months ago
- This python package is for transitioning bioconductor from SVN to git☆14Mar 15, 2023Updated 3 years ago
- A slimmed down version of scran, based on the C++ library of the same name.☆10Oct 15, 2024Updated 2 years ago
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Aug 4, 2017Updated 9 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- GitHub action to run CRAN-style reverse dependency check☆35Jun 13, 2026Updated 4 months ago
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension☆14Jul 22, 2025Updated last year
- ☆11Sep 5, 2018Updated 8 years ago
- Workflow for germline short variant discovery using GATK4☆12Aug 26, 2022Updated 4 years ago
- Collection of shiny apps for teaching R, statistics, or anything else☆13Jun 14, 2020Updated 6 years ago
- Transcript quantification import with automatic metadata detection☆72Oct 25, 2026Updated last week
- Static SCIP code-intelligence indexer for R packages (tree-sitter, optional R runtime for deeper symbol resolution)☆14Updated this week