An RNA pipeline built on top of ADAM. Apache 2 licensed.
☆19Jan 19, 2018Updated 8 years ago
Alternatives and similar repositories for rice
Users that are interested in rice are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Variant Caller, Distributed. Apache 2 licensed.☆72Mar 11, 2019Updated 7 years ago
- Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.☆43Feb 13, 2026Updated 8 months ago
- Helper functions to use knitr as a lab notebook☆13Jan 4, 2013Updated 13 years ago
- Integrate the GA4GH schemas and probably a scala impl of the service.☆14May 20, 2016Updated 10 years ago
- MultiBreak-SV identifies structural variants from next-generation paired end data, third-generation long read data, or data from a combin…☆12Jul 19, 2016Updated 10 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆13Jun 24, 2016Updated 10 years ago
- SNAPR: a bioinformatics pipeline for efficient and accurate RNA-seq alignment and analysis☆25Apr 7, 2015Updated 11 years ago
- streaming, flexible agglomerative clustering☆13Oct 29, 2014Updated 12 years ago
- Ready-to-go Parquet-formatted public 'omics datasets☆30Nov 2, 2015Updated 11 years ago
- Shimmer is a software package for the characterization of genetic differences between two very similar samples, e.g., a tumor sample and …☆12Jan 12, 2023Updated 3 years ago
- libmaus☆12Apr 16, 2015Updated 11 years ago
- It's a methods repository!☆10Oct 9, 2026Updated 3 weeks ago
- DEPRECATED: Store and query public TCGA data☆11Sep 15, 2016Updated 10 years ago
- CureFFI.org☆16Oct 22, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆12Jun 29, 2018Updated 8 years ago
- A mirror of https://bitbucket.org/weischen/pcawg-delly-workflow☆19Jan 22, 2020Updated 6 years ago
- Sequential lm for methylation data☆10Jan 11, 2019Updated 7 years ago
- Mapping scheme test software, to be extended to sequence graphs.☆10Sep 28, 2022Updated 4 years ago
- WG3 Metadata Specification☆28Nov 5, 2018Updated 7 years ago
- BITS: Binary Interval Search☆26Jun 30, 2026Updated 4 months ago
- Normalization for single cell RNA-seq data☆11Aug 25, 2022Updated 4 years ago
- An automated workflow for processing ddRADseq data using Stacks v2.4. Starts with sequencer files, and ends with various input files for …☆10Apr 25, 2024Updated 2 years ago
- phy-mer☆11Oct 12, 2017Updated 9 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- The UltraPlexer is a kmer-based tool that allows assigning non-barcoded long-read sequences generated by the Oxford Nanopore Technology t…☆10Aug 16, 2021Updated 5 years ago
- Exploratory Data Analysis in the Browser with R backend☆11Sep 4, 2014Updated 12 years ago
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 5 years ago
- [Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0☆75Nov 18, 2020Updated 5 years ago
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Feb 1, 2020Updated 6 years ago
- A fast, parallel, streaming multipart uploader for S3☆14Mar 23, 2017Updated 9 years ago
- Foundry Compiler☆24Dec 27, 2013Updated 12 years ago
- Alignment and variant-calling pipeline for Illumina HIV sequences.☆11May 19, 2020Updated 6 years ago
- Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point f…☆11Dec 11, 2020Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆12Nov 9, 2020Updated 5 years ago
- Generate and process BAM files from Illumina sequencing instrument files☆23Feb 25, 2016Updated 10 years ago
- ☆15Nov 9, 2018Updated 7 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- BGZF Stream☆13Jul 27, 2023Updated 3 years ago
- ☆10Jun 5, 2018Updated 8 years ago
- Genome inference from a population reference graph☆96Apr 1, 2025Updated last year