StatGenPRD / STOPGAP
Scripts for generating integrated dataset from publically available data sources to evaluate known genetic associations evidence of varying disease areas and supporting information. The integrated dataset is also included.
☆11Updated 4 years ago
Alternatives and similar repositories for STOPGAP:
Users that are interested in STOPGAP are comparing it to the libraries listed below
- Examples of kallisto + sleuth☆11Updated 7 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- Interface to 10x Genomics' 1.3 m single cell data set☆18Updated 6 years ago
- Various Ideas for Confounder Adjustment in Regression☆23Updated last year
- ☆12Updated 6 years ago
- iS-CellR: interactive graphical tool for analysis of single-cell RNAseq data☆23Updated 5 years ago
- The official Inferelator repository maintained by current or former Bonneau lab members☆9Updated 7 years ago
- Tutorial for the analysis of scRNA-seq data in R☆18Updated 6 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 5 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆13Updated 5 years ago
- ☆11Updated 6 years ago
- Single sample network reconstruction in R☆21Updated 4 years ago
- GO-PCA: An Unsupervised Method to Explore Gene Expression Data Using Prior Knowledge☆14Updated 7 years ago
- Reproducible GSEA Benchmarking☆13Updated 3 months ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Updated 3 months ago
- Machine learning use cases for teaching☆13Updated 7 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- Interactive benchmarking of ranking and assignment methods☆14Updated last month
- Template for building a bioconductor workshop package using github actions☆20Updated 7 months ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 8 months ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated 4 months ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 10 years ago
- R scripts for analyzing the 1.3 million brain cell data set from 10X Genomics☆12Updated last year
- Gene network analysis☆19Updated 2 years ago
- The vignette provided has a basic sketch of the steps we interactively will go through to build a package with devtools, explains version…☆11Updated 4 years ago
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆20Updated 9 months ago
- An R package to increase interpretability of genes and SNPs (eg identified from GWAS and eQTL mapping)☆10Updated 2 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 5 years ago
- ☆10Updated 5 years ago