gengit / FRAMA
FRAMA: From RNA-seq data to annotated mRNA assemblies
☆12Updated 6 years ago
Alternatives and similar repositories for FRAMA:
Users that are interested in FRAMA are comparing it to the libraries listed below
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 4 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 10 months ago
- FREE Divergence Error-Correcting DNA Barcodes☆8Updated 6 years ago
- ☆25Updated 4 years ago
- A command line tool to compute mapping statistics from a BAM file☆24Updated 3 years ago
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- CLI to automate Nextflow pipeline testing☆12Updated last month
- Two pass alignment for long reads☆22Updated 4 years ago
- An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data☆13Updated 9 months ago
- ☆18Updated 4 years ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆16Updated 5 months ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆11Updated 4 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- Personal diploid genome creation and coordinate conversion☆24Updated 2 weeks ago
- Chromatin segmentation in R☆19Updated 7 years ago
- ☆19Updated last year
- Using k-mers to call HLA alleles in RNA sequencing data☆22Updated 6 years ago
- Simplify snpEff annotations for interesting cases☆21Updated 6 years ago
- interactive plots for differential expression analysis☆32Updated 3 weeks ago
- The original version of MGA has been archived - please see https://github.com/crukci-bioinformatics/mga2 instead.☆25Updated 4 years ago
- Calculate and plot distributions of genomic ranges☆26Updated last month
- Bedfile perturbation tool☆17Updated last year
- ☆16Updated last week
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 2 years ago
- Analysis of RNAseq data from (host-associated) microbial mixtures☆12Updated 5 years ago
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Updated 6 years ago
- Comprehensive Human Expressed SequenceS☆16Updated 8 months ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated last year
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆13Updated 6 years ago