FRAMA: From RNA-seq data to annotated mRNA assemblies
☆12Sep 28, 2018Updated 7 years ago
Alternatives and similar repositories for FRAMA
Users that are interested in FRAMA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Sep 11, 2020Updated 5 years ago
- R Shiny web-app for integrated metabolic network analysis☆11Aug 11, 2022Updated 3 years ago
- A server for maintaining high-throughput sequencing QC data☆13Aug 5, 2025Updated 11 months ago
- Hagfish - assess an assembly through creative use of coverage plots☆36Aug 9, 2012Updated 13 years ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- WGS (Wheat) Robust Assembly Pipeline☆22Sep 4, 2021Updated 4 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- List of conferences with talk videos posted online☆12Sep 23, 2023Updated 2 years ago
- Image and VM management for Jenkins, Spark and Mesos clusters in EC2☆22Jul 24, 2020Updated 5 years ago
- An R package to call oomycete effectors☆11Aug 31, 2023Updated 2 years ago
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated 2 years ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- PacBio hybrid error correction through iterative short read consensus☆60May 17, 2019Updated 7 years ago
- CLI to automate Nextflow pipeline testing☆13Dec 15, 2025Updated 7 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Jan 28, 2020Updated 6 years ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- Multi-sample transcriptome assembly from RNA-Seq☆26Jun 10, 2018Updated 8 years ago
- A project to launch the galaxy docker image easily using ansible☆11Jan 22, 2020Updated 6 years ago
- Unix-based RNA-seq quantification pipeline☆10Nov 18, 2015Updated 10 years ago
- An R package for the Google Kubernetes Engine API☆15May 1, 2018Updated 8 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆22May 27, 2026Updated last month
- Arnie-based DegScore tool.☆27Sep 30, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- d'accord is a non hybrid long read consensus program based on local de Bruijn graph assembly☆19Sep 12, 2018Updated 7 years ago
- ☆11Feb 20, 2024Updated 2 years ago
- A read alignment visualization library for long reads☆10Aug 6, 2022Updated 3 years ago
- Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.☆22Feb 10, 2019Updated 7 years ago
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- Client side iobio library for building and executing iobio commands☆10Dec 31, 2018Updated 7 years ago
- Code for the Brassica oleracea/rapa/napus genomic comparison☆16Apr 29, 2021Updated 5 years ago
- Multiple sequence alignment browser☆11Dec 12, 2022Updated 3 years ago
- flexible pipelines for scalable secretome prediction, R package☆12Feb 21, 2019Updated 7 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Map genetic variants and protein positions to protein interfaces in 3D☆13Sep 22, 2023Updated 2 years ago
- Compare assembly graph file formats☆16Jul 23, 2015Updated 10 years ago
- a quick shiny server in a Singularity Container. For @griznog!☆19Nov 6, 2018Updated 7 years ago
- Homebrew repository for CloudBioLinux: incubator for formulas to end up in homebrew-science☆19Oct 17, 2016Updated 9 years ago
- ☆13Updated this week
- Two pass alignment for long reads☆22Mar 9, 2021Updated 5 years ago
- Scaffolding with RNA-seq read alignment☆21Jul 10, 2018Updated 8 years ago