Ensembl / ensembl-rest
Language agnostic RESTful data access to Ensembl data over HTTP
☆141Updated 2 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for ensembl-rest
- Plugins for the Ensembl Variant Effect Predictor (VEP)☆141Updated this week
- A tool set for short variant discovery in genetic sequence data.☆192Updated 3 years ago
- web-based analysis tool for rare disease genomics☆176Updated this week
- BEDOPS: high-performance genomic feature operations☆300Updated 9 months ago
- Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing☆133Updated 4 years ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆189Updated 3 years ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆257Updated 10 months ago
- This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file…☆122Updated 4 years ago
- VarDict☆187Updated 10 months ago
- GA4GH Variation Representation Python Implementation☆51Updated this week
- ☆252Updated last week
- Count bases in BAM/CRAM files☆305Updated 2 years ago
- Call and score variants from WGS/WES of rare disease patients.☆87Updated this week
- A structural variation pipeline for short-read sequencing☆171Updated this week
- The DevNet project on github stores the PacBio DevNet website.☆115Updated 6 years ago
- Extensible specification for representing and uniquely identifying biological sequence variation☆80Updated this week
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆204Updated 4 months ago
- GATK RNA-Seq Variant Calling in Nextflow☆132Updated last year
- *DEPRECATED* Job management for the Ensembl Genebuild pipeline☆60Updated 8 months ago
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel☆140Updated this week
- Automatically exported from code.google.com/p/ea-utils☆95Updated last year
- A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline☆187Updated last year
- Documentation and description of AWS iGenomes S3 resource.☆107Updated 4 years ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆192Updated last week
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆154Updated last year
- integrated RNA-seq Analysis Pipeline☆82Updated 5 years ago
- Genomic Interactive Visualization Engine☆144Updated last year
- Annotation and Ranking of Structural Variation☆217Updated 2 months ago
- Tools for processing and analyzing structural variants.☆150Updated 2 years ago
- Long read production pipelines☆141Updated this week