Alternatives and similar repositories for ensembl-rest

Users that are interested in ensembl-rest are comparing it to the libraries listed below

• macarthur-lab / clinvar
  This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file…
  ☆127Updated 5 years ago
• Ensembl / VEP_plugins
  Plugins for the Ensembl Variant Effect Predictor (VEP)
  ☆154Updated 3 weeks ago
• ga4gh / vrs
  Extensible specification for representing and uniquely identifying biological sequence variation
  ☆92Updated last week
• broadinstitute / seqr
  web-based analysis tool for rare disease genomics
  ☆191Updated this week
• Ensembl / ensembl
  The Ensembl Core Perl API and SQL schema
  ☆81Updated last week
• bioconda / bioconda-utils
  Utilities for building and managing bioconda recipes
  ☆103Updated this week
• maasha / biopieces
  Biopieces is a bioinformatic framework of tools easily used and easily created.
  ☆142Updated 7 years ago
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆146Updated last week
• biosql / biosql
  ☆90Updated 6 years ago
• bxlab / bx-python
  Tools for manipulating biological data, particularly multiple sequence alignments
  ☆157Updated last week
• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆58Updated last week
• nunofonseca / irap
  integrated RNA-seq Analysis Pipeline
  ☆83Updated 6 years ago
• PharmGKB / PharmCAT
  The Pharmacogenomic Clinical Annotation Tool
  ☆141Updated this week
• simon-anders / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆125Updated 5 years ago
• ewels / AWS-iGenomes
  Documentation and description of AWS iGenomes S3 resource.
  ☆114Updated 8 months ago
• The-Sequence-Ontology / Specifications
  GFF and GVF specification documents
  ☆215Updated last year
• prog4biol / pfb2017
  ☆21Updated 6 years ago
• stevekm / nextflow-demos
  Example Nextflow pipelines and programming techniques
  ☆107Updated 2 months ago
• SciLifeLab / Sarek
  Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
  ☆133Updated 5 years ago
• igvteam / igv-webapp
  IGV Web App
  ☆123Updated last week
• Ensembl / ensembl-tools
  Ensembl tools
  ☆35Updated 3 months ago
• biocommons / uta
  Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…
  ☆66Updated 4 months ago
• griffithlab / pVACtools
  ☆157Updated 3 weeks ago
• mdshw5 / fastqp
  Simple FASTQ quality assessment using Python
  ☆109Updated 4 years ago
• neufeld / pandaseq
  PAired-eND Assembler for DNA sequences
  ☆134Updated 4 years ago
• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆87Updated last week
• konradjk / exac_browser
  Browser for ExAC consortium data
  ☆106Updated 3 years ago
• KarchinLab / open-cravat
  A modular annotation tool for genomic variants
  ☆126Updated 2 weeks ago
• Clinical-Genomics / genmod
  Annotate models of genetic inheritance patterns in variant files (vcf files)
  ☆82Updated last month
• atks / vt
  A tool set for short variant discovery in genetic sequence data.
  ☆200Updated 4 years ago