stephaniehicks / qsmoothLinks
Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumptions about the data generation process: quantile normalization and quantile normalization between groups.
☆52Updated 2 years ago
Alternatives and similar repositories for qsmooth
Users that are interested in qsmooth are comparing it to the libraries listed below
Sorting:
- Transcript quantification import with automatic metadata detection☆67Updated this week
- A R package for Grade of Membership model and Visualization of counts data:☆32Updated 4 years ago
- Glimma R package☆50Updated last year
- countsimQC - Compare characteristic features of count data sets☆29Updated 2 months ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 6 years ago
- Tools for visualizing genomics data☆69Updated 3 years ago
- Normalization for single cell RNA-seq data☆48Updated 3 months ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆43Updated 2 months ago
- An R Package for Geneset Enrichment Workflows☆76Updated 3 weeks ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated last year
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 9 months ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year
- A small R package to make sequencing read coverage plots in R.☆39Updated this week
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆61Updated 5 months ago
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- DESeq2 or edgeR☆22Updated 9 years ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆47Updated 3 weeks ago
- Differential Count Data Analysis Toolbox☆61Updated last year
- Devel repository for minfi☆60Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- Code and simulations using biologically annotated neural networks☆21Updated 4 years ago
- R package for extracting mutation signatures from a list of somatic mutations☆37Updated 6 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Bioconductor package for management of multi-assay data☆72Updated last month
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated 2 months ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago