stephaniehicks / qsmoothLinks
Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumptions about the data generation process: quantile normalization and quantile normalization between groups.
☆52Updated 3 years ago
Alternatives and similar repositories for qsmooth
Users that are interested in qsmooth are comparing it to the libraries listed below
Sorting:
- Transcript quantification import with automatic metadata detection☆67Updated last week
- A R package for Grade of Membership model and Visualization of counts data:☆32Updated 4 years ago
- Glimma R package☆50Updated last year
- countsimQC - Compare characteristic features of count data sets☆29Updated last month
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 11 months ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 6 years ago
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- A small R package to make sequencing read coverage plots in R.☆40Updated last month
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated last month
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- An R Package for Geneset Enrichment Workflows☆76Updated 2 months ago
- Devel repository for minfi☆63Updated last year
- ☆21Updated 8 years ago
- Normalization for single cell RNA-seq data☆49Updated 5 months ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆35Updated 7 years ago
- Differential Count Data Analysis Toolbox☆61Updated last year
- Integrating zingeR with ZINB-WaVE weights☆24Updated 7 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 3 weeks ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated last month
- Independent Hypothesis Weighting☆15Updated 2 years ago
- Tools for visualizing genomics data☆69Updated 4 years ago
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆61Updated 7 months ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆32Updated 2 months ago