Simple simulation of single-cell RNA sequencing data
☆235May 20, 2026Updated last month
Alternatives and similar repositories for splatter
Users that are interested in splatter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/pa…☆88Apr 14, 2026Updated 2 months ago
- Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCe…☆75May 14, 2026Updated last month
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆228Updated this week
- ☆12Jul 13, 2018Updated 7 years ago
- Table of software for the analysis of single-cell RNA-seq data.☆339Jun 26, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- This contains the dataset for comparing scRNA-seq analysis methods☆94Aug 26, 2020Updated 5 years ago
- R package for integrating and analyzing multiple single-cell datasets☆431Feb 4, 2026Updated 5 months ago
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆154Jun 26, 2026Updated last week
- Data and analysis for the Splatter paper☆31Dec 4, 2017Updated 8 years ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆339Apr 23, 2024Updated 2 years ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆302Jun 17, 2025Updated last year
- Conversion between scRNA-seq objects☆210May 5, 2026Updated last month
- Deep count autoencoder for denoising scRNA-seq data☆274Mar 21, 2024Updated 2 years ago
- Tools and methods for analysis of single cell assay data in R☆265Oct 17, 2025Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R package for analyzing single-cell RNA-seq data☆180Feb 29, 2024Updated 2 years ago
- Scripts for data and figure generation in SAVER paper☆18Jan 5, 2021Updated 5 years ago
- Toolkit for Single-Cell Velocity☆61Apr 17, 2026Updated 2 months ago
- Single-cell RNA-seq Gene Expression Recovery☆116Nov 28, 2024Updated last year
- Fast, sensitive and accurate integration of single-cell data with Harmony☆661Jun 5, 2026Updated 3 weeks ago
- MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological …☆384Oct 3, 2024Updated last year
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆266Jan 10, 2026Updated 5 months ago
- Imputation method for scRNA-seq based on low-rank approximation☆80Dec 14, 2023Updated 2 years ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆213Jan 9, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Interactively analyze single cell genomic data☆188Jan 14, 2026Updated 5 months ago
- benchmark for single-cell RNA-seq imputation methods☆30Mar 16, 2024Updated 2 years ago
- A package to help convert different single-cell data formats to each other☆472Feb 20, 2026Updated 4 months ago
- Accurate and robust imputation of scRNA-seq data☆101Aug 21, 2019Updated 6 years ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 3 years ago
- Regulatory networks with Direct Information in python☆41Mar 9, 2023Updated 3 years ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,649Jun 25, 2026Updated last week
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 5 years ago
- Panoramic stitching of single cell data☆295Jul 14, 2025Updated 11 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Automated cell type classification☆116Jan 3, 2025Updated last year
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆124Apr 16, 2025Updated last year
- Benchmarking analysis of data integration tools☆423Apr 27, 2026Updated 2 months ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆296Jul 12, 2024Updated last year
- Clone identification from single-cell data☆65Nov 10, 2022Updated 3 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆31Jun 14, 2022Updated 4 years ago
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,771Jun 23, 2026Updated last week