Fast but inaccurate adapter trimmer for Illumina reads
☆16Mar 17, 2022Updated 4 years ago
Alternatives and similar repositories for trimadap
Users that are interested in trimadap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 9 years ago
- ☆18Jul 9, 2018Updated 7 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Dec 15, 2022Updated 3 years ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- Fast fusion detection using kallisto☆79Jun 11, 2025Updated 9 months ago
- ELECTOR: EvaLuator of Error Correction Tools for lOng Reads☆15May 27, 2021Updated 4 years ago
- ☆25Nov 29, 2022Updated 3 years ago
- Developments in next generation sequencing: instruments, read lengths, throughput. See☆26Apr 2, 2018Updated 7 years ago
- Pipeline for poreathon☆14Dec 17, 2014Updated 11 years ago
- Demonstrating the PRoot program☆11Jul 29, 2016Updated 9 years ago
- A configurable de novo assembly pipeline☆29Jun 29, 2016Updated 9 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- KAUST Assembly Read Error Correction Tool☆15Aug 15, 2015Updated 10 years ago
- ☆18Nov 16, 2015Updated 10 years ago
- Overlapped primer design for entire coding sequence of the gene with specificity check☆13Feb 22, 2022Updated 4 years ago
- A Python wrapper for the bbhash library for Minimal Perfect Hashing☆19Oct 26, 2025Updated 4 months ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Jan 19, 2021Updated 5 years ago
- High-performance error correction for Illumina resequencing data☆74May 31, 2016Updated 9 years ago
- ChIP-seq peak calling with GC effects adjustment☆10Jul 5, 2018Updated 7 years ago
- Course material for the de novo assembly part of the INF-BIO9120 course at Univ. of Oslo Fall 2013☆37Oct 1, 2013Updated 12 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- A pipeline for detecting mis-assemblies in metagenomic assemblies.☆14Nov 3, 2017Updated 8 years ago
- Ray -- Parallel genome assemblies for parallel DNA sequencing☆68Jul 26, 2017Updated 8 years ago
- Utility program for extracting sequences from a fasta/fastq file☆35Dec 23, 2024Updated last year
- Indel caller for DNA-seq or RNA-seq☆16Aug 8, 2023Updated 2 years ago
- Components of genome sequence assembly tools☆21Mar 30, 2022Updated 3 years ago
- Experiments for "Scaling read aligners to hundreds of threads on general-purpose processors"☆11Jun 8, 2018Updated 7 years ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 8 years ago
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆47Jul 12, 2020Updated 5 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- use the noise☆15Apr 15, 2020Updated 5 years ago
- FermiKit small variant calls for public SGDP samples☆17Sep 22, 2016Updated 9 years ago
- Add multiple thread function for genome comparison☆16Sep 29, 2021Updated 4 years ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 5 years ago
- ☆24Apr 2, 2021Updated 4 years ago
- Transcript quantification import with automatic metadata detection☆70Mar 3, 2026Updated 3 weeks ago
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 10 years ago