churchlab / millstone
Genome engineering and analysis software
☆47Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for millstone
- Python library and scripts for retrieval and storage of genomics data in HDF5 format☆26Updated 5 years ago
- Tool for finding matches to degenerate sequence motifs in FASTA files.☆12Updated 8 months ago
- Efficient handling of FASTQ files from Python☆50Updated 2 months ago
- Consensus assembly and variant calling workflow.☆12Updated 9 years ago
- ☆35Updated last year
- ☆27Updated 3 weeks ago
- Scalable RNA-seq analysis☆73Updated 3 years ago
- A pipeline for the computational evaluation of RNA-Seq data☆37Updated 2 months ago
- This is a short response to the 2018 RFI on NIH Strategic Plan for Data Science☆16Updated 6 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 2 years ago
- Javascript library for visualizing genomics data with D3.☆19Updated 7 years ago
- ☆29Updated 4 months ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- This BLENDER has been sunsetted☆16Updated last month
- Genetics training camp☆21Updated 4 years ago
- GenoTypes Compressor☆15Updated 2 years ago
- Biological Graphic tool in Python☆34Updated 4 years ago
- Efficient base quality score recalibrator for NGS data☆24Updated 8 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆31Updated last year
- Universal RObust Peak Annotator☆15Updated 11 months ago
- Nanopore desc☆18Updated 8 years ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 3 years ago
- Simple and efficient access to genomic data for deep learning models.☆43Updated 4 years ago
- robust matching of small variant datasets using flexible scoring schemes☆10Updated 4 years ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆97Updated last year
- Build an index for your BAM Index (BAI)☆17Updated 9 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- A library for next generation genomics in Python 3☆18Updated 6 years ago
- A repository for the GenGraph toolkit for the creation and manipulation of graph genomes☆51Updated 3 years ago
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 7 years ago