snakemake-workflows / rna-seq-star-deseq2Links
RNA-seq workflow using STAR and DESeq2
☆341Updated 10 months ago
Alternatives and similar repositories for rna-seq-star-deseq2
Users that are interested in rna-seq-star-deseq2 are comparing it to the libraries listed below
Sorting:
- Intro to ChIPseq using HPC☆307Updated 2 years ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆397Updated 2 weeks ago
- Application for making ENCODE Blacklists☆309Updated 4 years ago
- Download FASTQ files from SRA or ENA repositories.☆330Updated 2 months ago
- ATAC-seq peak-calling and QC analysis pipeline☆201Updated 3 weeks ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆280Updated 10 months ago
- ☆197Updated 2 months ago
- This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster☆170Updated 4 years ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆251Updated 4 months ago
- parallel fastq-dump wrapper☆295Updated 2 years ago
- Quick mining and visualization of NGS data by integrating genomic databases☆265Updated 2 years ago
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆329Updated 3 months ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆422Updated last month
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆215Updated 4 months ago
- Fast and accurate gene fusion detection from RNA-Seq data☆241Updated 2 months ago
- This Snakemake pipeline implements the GATK best-practices workflow☆253Updated last year
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆406Updated last year
- SUPPA: Fast quantification of splicing and differential splicing☆275Updated 11 months ago
- A collection of scripts and notes related to genomics and bioinformatics☆211Updated last month
- ENCODE ATAC-seq pipeline☆418Updated 10 months ago
- Collections of library structure and sequence of popular single cell genomic methods☆467Updated 2 weeks ago
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆215Updated this week
- This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.☆241Updated 2 years ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆224Updated last week
- ☆260Updated 6 months ago
- ☆151Updated 2 years ago
- Tool for plotting sequencing data along genomic coordinates.☆294Updated 2 weeks ago
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆442Updated last year
- ☆392Updated 3 years ago
- Nextflow training material☆171Updated this week