snakemake-workflows / rna-seq-star-deseq2
RNA-seq workflow using STAR and DESeq2
☆339Updated 7 months ago
Alternatives and similar repositories for rna-seq-star-deseq2:
Users that are interested in rna-seq-star-deseq2 are comparing it to the libraries listed below
- Application for making ENCODE Blacklists☆294Updated 3 years ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆244Updated last month
- Customizable workflows based on snakemake and python for the analysis of NGS data☆394Updated this week
- Intro to ChIPseq using HPC☆300Updated 2 years ago
- Quick mining and visualization of NGS data by integrating genomic databases☆264Updated last year
- This Snakemake pipeline implements the GATK best-practices workflow☆250Updated last year
- parallel fastq-dump wrapper☆288Updated last year
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆278Updated 8 months ago
- This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster☆166Updated 3 years ago
- A collection of scripts and notes related to genomics and bioinformatics☆207Updated last month
- Fast and accurate gene fusion detection from RNA-Seq data☆235Updated this week
- ☆192Updated this week
- ATAC-seq peak-calling and QC analysis pipeline☆197Updated last week
- SUPPA: Fast quantification of splicing and differential splicing☆272Updated 9 months ago
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆207Updated last week
- Collections of library structure and sequence of popular single cell genomic methods☆453Updated 3 months ago
- Download FASTQ files from SRA or ENA repositories.☆309Updated 5 months ago
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆325Updated last month
- ☆147Updated 2 years ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆210Updated last week
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆396Updated 11 months ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆410Updated 2 months ago
- This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.☆240Updated 2 years ago
- GTEx & TOPMed data production and analysis pipelines☆358Updated last month
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆264Updated last year
- Plot structural variant signals from many BAMs and CRAMs☆540Updated 8 months ago
- Web application to explore the Sequence Read Archive.☆215Updated this week
- ☆244Updated 4 months ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆209Updated last month
- ☆386Updated 3 years ago