snakemake-workflows / rna-seq-star-deseq2
RNA-seq workflow using STAR and DESeq2
☆339Updated 9 months ago
Alternatives and similar repositories for rna-seq-star-deseq2
Users that are interested in rna-seq-star-deseq2 are comparing it to the libraries listed below
Sorting:
- Application for making ENCODE Blacklists☆304Updated 4 years ago
- parallel fastq-dump wrapper☆292Updated 2 years ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆249Updated 3 months ago
- Intro to ChIPseq using HPC☆304Updated 2 years ago
- This Snakemake pipeline implements the GATK best-practices workflow☆253Updated last year
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆280Updated 10 months ago
- Quick mining and visualization of NGS data by integrating genomic databases☆264Updated 2 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆274Updated 10 months ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆395Updated this week
- A collection of scripts and notes related to genomics and bioinformatics☆210Updated last month
- ATAC-seq peak-calling and QC analysis pipeline☆200Updated this week
- This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster☆168Updated 4 years ago
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆327Updated 2 months ago
- Download FASTQ files from SRA or ENA repositories.☆324Updated last month
- Fast and accurate gene fusion detection from RNA-Seq data☆238Updated last month
- ☆254Updated 5 months ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆211Updated 3 months ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆223Updated this week
- ☆194Updated last month
- ☆150Updated 2 years ago
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆404Updated last year
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆214Updated this week
- Collections of library structure and sequence of popular single cell genomic methods☆462Updated 5 months ago
- Tool for plotting sequencing data along genomic coordinates.☆289Updated 3 months ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆265Updated last year
- A short tutorial on how to use RSEM☆136Updated 5 years ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆419Updated 3 weeks ago
- Nextflow training material☆164Updated this week
- ENCODE ChIP-seq pipeline☆265Updated last year
- Web application to explore the Sequence Read Archive.☆216Updated last month