Alternatives and similar repositories for CellBench

Users that are interested in CellBench are comparing it to the libraries listed below

• skinnider / dismay
  Calculation of distance metrics for matrices
  ☆25Updated 6 years ago
• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆22Updated 7 months ago
• gjhunt / dtangle
  Cell type deconvolution from high-throughput gene expression profiling experiments.
  ☆31Updated 4 years ago
• jgamache014 / snRNA-seq-workflow
  Human brain, >200,000 nuclei
  ☆24Updated 4 years ago
• markziemann / mitch
  An R package for multi-dimensional pathway enrichment analysis
  ☆16Updated 4 months ago
• goncalves-lab / waddR
  R package for detecting differential distributions using a statistical test based on the wasserstein distance
  ☆27Updated 2 years ago
• dynverse / dynplot
  Visualising single-cell trajectories, including comparisons between two models 📈
  ☆31Updated 3 years ago
• epurdom / clusterExperiment
  R package of techniques for comparing clusterings of single-cell sequencing data
  ☆39Updated last year
• montilab / hypeR
  An R Package for Geneset Enrichment Workflows
  ☆76Updated 2 weeks ago
• BUStools / BUS_notebooks_R
  R vignettes for processing BUS format single-cell RNA-seq files
  ☆20Updated 5 years ago
• greenelab / miQC
  Flexible, probablistic metrics for quality control of scRNA-seq data
  ☆21Updated 2 years ago
• Bioconductor / BiocWorkshops2019
  The official repository of the Bioconductor 2019 Conference Workshops
  ☆25Updated 2 years ago
• LTLA / SingleCellThoughts
  Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.
  ☆47Updated 5 years ago
• igrabski / scRNAseq-cell-type
  Probabilistic gene expression barcodes for cell type annotation
  ☆25Updated 3 years ago
• leekgroup / networks_correction
  Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"
  ☆16Updated 6 years ago
• statOmics / zinbwaveZinger
  Integrating zingeR with ZINB-WaVE weights
  ☆24Updated 7 years ago
• SimoneTiberi / distinct
  distinct: a method for differential analyses via hierarchical permutation tests
  ☆11Updated last year
• genesofeve / projectR
  ☆62Updated 5 months ago
• randel / MIND
  Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution
  ☆45Updated 2 years ago
• immunogenomics / singlecellmethods
  Collection of useful methods for single cell analysis
  ☆14Updated last year
• kieranrcampbell / switchde
  Inference of switch-like differential expression along single-cell trajectories
  ☆21Updated 7 years ago
• immunogenomics / cdr3-QTL
  Trans-association between HLA and TCR-CDR3
  ☆18Updated 2 years ago
• statOmics / satuRn
  satuRn is a highly performant and scalable method for performing differential transcript usage analyses.
  ☆22Updated 2 years ago
• zdebruine / singlet
  Single-cell analysis with non-negative matrix factorization
  ☆45Updated last month
• Sarah145 / CCPlotR
  An R package for visualising cell-cell interactions
  ☆44Updated last year
• shazanfar / DCARS
  Differential Correlation across Ranked Samples
  ☆12Updated 2 years ago
• stephaniehicks / methylCC
  R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms
  ☆18Updated 2 years ago
• jessemzhang / tn_test
  post-clustering differential expression test
  ☆35Updated 6 years ago
• waldronlab / SingleCellMultiModal
  Single Cell multimodal data scripts for downloading datasets
  ☆17Updated 2 months ago
• kevinrue / velociraptor
  Toolkit for Single-Cell Velocity
  ☆58Updated last month