ctlab / LinSeedLinks
Linseed: LINear Subspace identification for gene Expresion Deconvolution
☆30Updated 2 months ago
Alternatives and similar repositories for LinSeed
Users that are interested in LinSeed are comparing it to the libraries listed below
Sorting:
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆47Updated 4 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated 2 months ago
- Toolkit for Single-Cell Velocity☆58Updated 3 weeks ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- A General Framework for Consensus Partitioning☆63Updated 6 months ago
- post-clustering differential expression test☆35Updated 6 years ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆45Updated 2 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆52Updated 4 years ago
- An r package that works as a wrapper to homologene☆46Updated last year
- Normalize CITEseq Data☆66Updated 4 months ago
- An R-based interface for loom files☆66Updated 5 years ago
- Identify and correct invalid gene symbols☆58Updated 8 months ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated 2 years ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)☆36Updated 7 months ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- Harvard FAS informatics scRNAseq workshop website☆38Updated 5 years ago
- ☆41Updated 4 years ago
- R package for benchmarking single cell analysis methods☆32Updated last year
- Single-cell analysis with non-negative matrix factorization☆45Updated last week
- An analytics package for single cell data☆22Updated 3 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated 10 months ago
- Calculation of distance metrics for matrices☆25Updated 6 years ago
- Cell type pipes for R☆51Updated last year
- ☆55Updated 5 months ago
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- ☆55Updated 4 years ago
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆67Updated last year
- R package to identify genes with differential distributions in single-cell RNA-seq☆33Updated 3 years ago