ctlab / LinSeedLinks
Linseed: LINear Subspace identification for gene Expresion Deconvolution
☆30Updated 3 weeks ago
Alternatives and similar repositories for LinSeed
Users that are interested in LinSeed are comparing it to the libraries listed below
Sorting:
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- post-clustering differential expression test☆35Updated 6 years ago
- ☆41Updated 4 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆42Updated 4 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆51Updated 4 years ago
- An r package that works as a wrapper to homologene☆45Updated last year
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated this week
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆38Updated 3 years ago
- ConsensusTME Gene Sets and R Script☆39Updated 11 months ago
- Normalize CITEseq Data☆65Updated last month
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆45Updated 2 years ago
- Toolkit for Single-Cell Velocity☆56Updated 5 months ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆44Updated 4 years ago
- ☆29Updated 2 years ago
- ☆43Updated last year
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- Toolbox with R scripts☆38Updated 6 years ago
- Identify and correct invalid gene symbols☆58Updated 6 months ago
- Single-cell Scalable Visualization and Analytics☆25Updated 6 years ago
- An R package to analyze single-cell V(D)J data☆26Updated last year
- ☆55Updated 4 years ago
- MASC: Mixed-effects Association testing for Single Cells☆15Updated 4 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 3 years ago
- Cell type pipes for R☆51Updated last year
- Lightweight Iterative Gene set Enrichment in R☆56Updated 8 months ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆23Updated last month
- ☆53Updated 3 months ago
- Harvard FAS informatics scRNAseq workshop website☆37Updated 5 years ago
- R package for specialised analysis of single cell data☆38Updated 2 years ago