ctlab / LinSeedLinks
Linseed: LINear Subspace identification for gene Expresion Deconvolution
☆31Updated 3 weeks ago
Alternatives and similar repositories for LinSeed
Users that are interested in LinSeed are comparing it to the libraries listed below
Sorting:
- An R Package for Geneset Enrichment Workflows☆76Updated last week
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆47Updated 5 years ago
- A General Framework for Consensus Partitioning☆63Updated 7 months ago
- post-clustering differential expression test☆36Updated 6 years ago
- Identify and correct invalid gene symbols☆59Updated 9 months ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆45Updated 2 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated 11 months ago
- ☆55Updated 6 months ago
- An R-based interface for loom files☆67Updated 5 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Normalize CITEseq Data☆66Updated 5 months ago
- ☆62Updated 5 months ago
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- A R package for Grade of Membership model and Visualization of counts data:☆32Updated 4 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆52Updated 4 years ago
- Toolkit for Single-Cell Velocity☆59Updated 2 months ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆22Updated 2 months ago
- An r package that works as a wrapper to homologene☆46Updated last year
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆45Updated 9 months ago
- R package to identify genes with differential distributions in single-cell RNA-seq☆33Updated 3 years ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- Cancer Dependency Map package☆30Updated last year
- ☆55Updated 4 years ago
- Toolbox with R scripts☆38Updated 6 years ago
- Clone of the Bioconductor repository for the scater package.☆97Updated 6 months ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- Exon-Intron Split Analysis (EISA) in R☆16Updated 4 months ago