ctlab / LinSeed
Linseed: LINear Subspace identification for gene Expresion Deconvolution
☆29Updated this week
Alternatives and similar repositories for LinSeed:
Users that are interested in LinSeed are comparing it to the libraries listed below
- supporting code for the multinomial single cell RNA-Seq paper☆51Updated 4 years ago
- post-clustering differential expression test☆35Updated 5 years ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆45Updated 2 years ago
- An r package that works as a wrapper to homologene☆45Updated last year
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆44Updated 4 years ago
- ConsensusTME Gene Sets and R Script☆39Updated 11 months ago
- MASC: Mixed-effects Association testing for Single Cells☆15Updated 4 years ago
- ☆41Updated 4 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- An R Package for Geneset Enrichment Workflows☆76Updated last month
- Clone identification from single-cell data☆61Updated 2 years ago
- Single-cell Scalable Visualization and Analytics☆25Updated 6 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆37Updated 3 years ago
- Clone of the Bioconductor repository for the scran package.☆41Updated 8 months ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆44Updated 8 years ago
- ☆29Updated 2 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆42Updated 4 years ago
- Identify and correct invalid gene symbols☆58Updated 5 months ago
- Normalize CITEseq Data☆65Updated last month
- Clone of the Bioconductor repository for the scRNAseq package.☆27Updated 3 months ago
- ☆22Updated 6 months ago
- Toolkit for Single-Cell Velocity☆55Updated 4 months ago
- Zhang, et al, Nature Immunology, 2019. Use single-cell transcriptomics and proteomics to study autoimmune diseases.☆20Updated last month
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 3 years ago
- An analytics package for single cell data☆22Updated 2 years ago
- ☆12Updated 11 months ago
- Cell type pipes for R☆51Updated last year
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago