ctlab / LinSeedLinks
Linseed: LINear Subspace identification for gene Expresion Deconvolution
☆32Updated 4 months ago
Alternatives and similar repositories for LinSeed
Users that are interested in LinSeed are comparing it to the libraries listed below
Sorting:
- post-clustering differential expression test☆36Updated 6 years ago
- An R-based interface for loom files☆67Updated 5 years ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆47Updated 3 months ago
- Normalize CITEseq Data☆66Updated last month
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆44Updated 5 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- supporting code for the multinomial single cell RNA-Seq paper☆53Updated 4 years ago
- An r package that works as a wrapper to homologene☆47Updated 2 years ago
- ☆55Updated 5 years ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆47Updated 2 years ago
- ☆55Updated 10 months ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated 2 weeks ago
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆46Updated 2 months ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆38Updated 3 years ago
- Clone identification from single-cell data☆61Updated 3 years ago
- scDataviz: single cell dataviz and downstream analyses☆65Updated 4 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆46Updated 9 years ago
- consistent quantification of external RNA-seq data sets☆58Updated 2 years ago
- Exon-Intron Split Analysis (EISA) in R☆17Updated last month
- R package to identify genes with differential distributions in single-cell RNA-seq☆33Updated 3 years ago
- Toolkit for Single-Cell Velocity☆58Updated 5 months ago
- Identify and correct invalid gene symbols☆60Updated last year
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Updated 7 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆24Updated 6 years ago
- Single-cell Scalable Visualization and Analytics☆26Updated 6 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- ☆43Updated 4 years ago
- A General Framework for Consensus Partitioning☆65Updated 10 months ago