ctlab / LinSeed
Linseed: LINear Subspace identification for gene Expresion Deconvolution
☆29Updated 5 years ago
Alternatives and similar repositories for LinSeed:
Users that are interested in LinSeed are comparing it to the libraries listed below
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆45Updated last year
- ConsensusTME Gene Sets and R Script☆39Updated 10 months ago
- MASC: Mixed-effects Association testing for Single Cells☆15Updated 4 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- ☆41Updated 4 years ago
- An r package that works as a wrapper to homologene☆45Updated last year
- supporting code for the multinomial single cell RNA-Seq paper☆51Updated 4 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆42Updated 4 years ago
- post-clustering differential expression test☆35Updated 5 years ago
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆41Updated 4 months ago
- An R Package for Geneset Enrichment Workflows☆76Updated last month
- Clone identification from single-cell data☆61Updated 2 years ago
- Clone of the Bioconductor repository for the batchelor package.☆16Updated last month
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 3 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆39Updated 2 years ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆44Updated 4 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- Toolkit for Single-Cell Velocity☆55Updated 3 months ago
- Identify and correct invalid gene symbols☆58Updated 5 months ago
- Toolbox with R scripts☆38Updated 6 years ago
- ☆28Updated 6 years ago
- ☆29Updated 2 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆47Updated 4 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆37Updated 3 years ago
- binned motif enrichment analysis and visualisation☆40Updated 3 weeks ago
- Evaluation of Cell Type Annotation R Packages on Single Cell RNA-seq Data☆29Updated last year
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- InstaPrism is an R package for fast implementation of BayesPrism☆36Updated 10 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year