Training material for intermediate R / Bioconductor courses
☆17Mar 15, 2023Updated 3 years ago
Alternatives and similar repositories for UseBioconductor
Users that are interested in UseBioconductor are comparing it to the libraries listed below
Sorting:
- Training material for introductory R / Bioconductor courses☆91Mar 15, 2023Updated 3 years ago
- Generate command line parser using getopt_long☆16Dec 11, 2024Updated last year
- A tool for investigating alternative mRNA splicing in next generation mRNA sequence data.☆11Mar 3, 2017Updated 9 years ago
- TFFM framework☆13Sep 22, 2025Updated 5 months ago
- Shiny-Seq: A web based interactive pipeline to analyze RNA-Seq data☆21Apr 24, 2019Updated 6 years ago
- Code and data used in Mollentze et al. (2021) "Identifying and prioritizing potential human-infecting viruses from their genome sequences…☆18Dec 1, 2025Updated 3 months ago
- Guide to transcriptome assembly & analysis☆21Apr 12, 2017Updated 8 years ago
- GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF☆19Oct 30, 2020Updated 5 years ago
- draw sequence logos tailored to deep mutational scanning (DMS) data☆12Feb 12, 2026Updated last month
- [DEPRECATED] Docker containers for Bioconductor☆49Mar 15, 2023Updated 3 years ago
- hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data☆13Jul 12, 2024Updated last year
- Ribosome profiling analysis framework as described in de Klerk E., Fokkema I.F.A.C et al (2015). Alignment, triplet periodicity analysis,…☆12May 16, 2023Updated 2 years ago
- Single cell network synthesis toolkit☆23Feb 15, 2021Updated 5 years ago
- Epidemiological modeling framework for pathogen population genetics and evolution.☆18Oct 7, 2024Updated last year
- Fast Bayesian Hidden Markov Model with Wavelet Compression☆17Jan 24, 2020Updated 6 years ago
- ☆13Sep 22, 2017Updated 8 years ago
- A tool for Read Multi-Mapper Resolution☆24Feb 15, 2017Updated 9 years ago
- An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.☆64Sep 4, 2017Updated 8 years ago
- example ruffus pipeline☆18Sep 30, 2011Updated 14 years ago
- Materials for a workshop on developing undergraduate classes on Bayesian statistics.☆47Jun 14, 2016Updated 9 years ago
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Jan 29, 2026Updated last month
- D Text User Interface library☆12Jun 28, 2019Updated 6 years ago
- Snakemake library for bioinformatics programs, with a focus on next-generation sequencing☆22Feb 4, 2016Updated 10 years ago
- Single Cell Genomics for Enhancing Cell Composition Inference from Bulk Genomics Data☆20Jul 13, 2021Updated 4 years ago
- Bayesian State Space and Dynamic Models☆34Dec 7, 2011Updated 14 years ago
- Easy to use javascript plugin to draw nice boxes and arrows to your website from simple markup like "(User) > (Admin)"☆42Apr 13, 2014Updated 11 years ago
- A neural network library based on tensorflow and with true sklearn compatibility.☆11Sep 17, 2016Updated 9 years ago
- 'h'omeworks, 'a'ssignments 'tex' for courses at USC☆16May 4, 2020Updated 5 years ago
- Course material for CSAMA 2015: Statistics and Computing in Genome Data Science☆11Mar 15, 2023Updated 3 years ago
- Command line based todo list manager☆17Mar 22, 2017Updated 8 years ago
- MUMmer for HPC☆17Jan 7, 2013Updated 13 years ago
- *UNOFFICIAL, UNMAINTAINED and OUTDATED*: This was an unofficial archive of GMAP-GSNAP releases. Please use the original website for curr…☆33Nov 1, 2015Updated 10 years ago
- A suite of scientific workflows to assess metrics to compare efficacy of protein-based tumor deconvolution algorithms.☆16Jan 15, 2024Updated 2 years ago
- Scalable RNA-seq analysis☆73Jan 12, 2021Updated 5 years ago
- R/qtlcharts: An R package for interactive QTL graphics☆86May 10, 2025Updated 10 months ago
- Position-wise analysis of sequencing and genomics data☆41Jul 6, 2023Updated 2 years ago
- ☆19Sep 27, 2013Updated 12 years ago
- An Oxford Nanopore Basecaller☆70Sep 4, 2021Updated 4 years ago
- Yeoman generator for Ember.js/RequireJS/gulp/Express web applications http://yeoman.io☆23Jan 6, 2015Updated 11 years ago