KenLauLab / DR-structure-preservationLinks
A quantitative framework for evaluating data structure preservation by dimensionality reduction techniques
☆16Updated 4 years ago
Alternatives and similar repositories for DR-structure-preservation
Users that are interested in DR-structure-preservation are comparing it to the libraries listed below
Sorting:
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆22Updated 4 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated last year
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Updated 6 years ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 4 years ago
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆27Updated 4 years ago
- Test genes for Spatial Variation☆15Updated 10 months ago
- Spatial analysis toolkit for single cell multiplexed tissue data☆30Updated last year
- SingleCellFusion--a tool to integrate single-cell transcriptome and epigenome data☆12Updated 3 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 5 months ago
- Nonnegative spatial factorization for multivariate count data☆61Updated 2 years ago
- ☆27Updated 5 years ago
- An interface for Nested Stochastic Block Model for single cell analysis☆36Updated last month
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- MultiMAP for integration of single cell multi-omics☆56Updated 2 years ago
- Single-cell Hierarchical Poisson Factorization☆73Updated 3 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Updated 4 years ago
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- ☆30Updated last year
- Scripts for data and figure generation in SAVER paper☆17Updated 4 years ago
- Methods for visualization and analysis of spatially-resolved gene expression☆21Updated 3 months ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆39Updated 4 years ago
- A tool for single-cell data analysis.☆41Updated last month
- CAST package☆40Updated last year
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆76Updated 10 months ago
- ☆45Updated 3 months ago
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆35Updated 2 years ago