KenLauLab / DR-structure-preservation
A quantitative framework for evaluating data structure preservation by dimensionality reduction techniques
☆15Updated 3 years ago
Alternatives and similar repositories for DR-structure-preservation
Users that are interested in DR-structure-preservation are comparing it to the libraries listed below
Sorting:
- Test genes for Spatial Variation☆14Updated 4 months ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 3 years ago
- ☆26Updated 7 months ago
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆21Updated 3 years ago
- ☆26Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆49Updated this week
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- Nonnegative spatial factorization for multivariate count data☆59Updated last year
- ☆21Updated 2 years ago
- CAST package☆34Updated 6 months ago
- Spatially-resolved Transcriptomics via Epitope Anchoring☆19Updated last year
- ☆25Updated 5 years ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆47Updated 3 months ago
- scRNAseq integration with triplet neural networks☆40Updated 2 years ago
- ☆35Updated 2 months ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆24Updated 2 years ago
- ☆21Updated 2 years ago
- Scripts for data and figure generation in SAVER paper☆17Updated 4 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- STREAM2: Fast, scalable, and interactive trajectory analysis of single-cell omics data☆10Updated last year
- ☆17Updated 8 months ago
- ☆21Updated 3 years ago
- Reproducing all analyses and figures for the ASAP-seq paper☆29Updated 3 years ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆54Updated last month
- SingleCellFusion--a tool to integrate single-cell transcriptome and epigenome data☆12Updated 3 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆13Updated 5 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- ☆19Updated 5 years ago