A quantitative framework for evaluating data structure preservation by dimensionality reduction techniques
☆16Jun 1, 2021Updated 4 years ago
Alternatives and similar repositories for DR-structure-preservation
Users that are interested in DR-structure-preservation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Comparison of dimensionality reduction methods☆30Mar 24, 2020Updated 6 years ago
- scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks☆11Aug 4, 2020Updated 5 years ago
- TARDIS: Topological Algorithms for Robust DIscovery of Singularities☆44Jul 28, 2023Updated 2 years ago
- Snakemake workflow to benchmark scRNA-seq data simulators☆14Aug 10, 2022Updated 3 years ago
- Maximum mean discrepancy comparisons for single cell profiling experiments☆20Feb 9, 2022Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Spatial analysis toolkit for single cell multiplexed tissue data☆30Sep 2, 2024Updated last year
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Jun 5, 2019Updated 6 years ago
- GrandPrix☆16May 27, 2019Updated 6 years ago
- tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data☆17Jun 4, 2019Updated 6 years ago
- Using SHAP values as feature selection mechanism☆22May 15, 2022Updated 3 years ago
- This repository is retired software☆14Oct 29, 2015Updated 10 years ago
- ☆12Oct 7, 2020Updated 5 years ago
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆30Nov 29, 2019Updated 6 years ago
- ☆19Oct 27, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆22Sep 28, 2021Updated 4 years ago
- Comparison, benchmarking & QC of epigenetic datasets☆17Dec 2, 2025Updated 4 months ago
- Scripts for data and figure generation in SAVER paper☆18Jan 5, 2021Updated 5 years ago
- A clusterability measure for scRNA-seq data.☆18Feb 2, 2022Updated 4 years ago
- ☆12Jun 16, 2025Updated 9 months ago
- ☆12Jul 13, 2018Updated 7 years ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆22Jun 7, 2021Updated 4 years ago
- Cluster Identity Predictor (R package implementation)☆21Mar 8, 2022Updated 4 years ago
- ☆12Feb 7, 2017Updated 9 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Clone identification from single-cell data☆63Nov 10, 2022Updated 3 years ago
- Graph-based Decoding for In Situ Sequencing☆10Jul 2, 2020Updated 5 years ago
- countsimQC - Compare characteristic features of count data sets☆30Feb 7, 2026Updated 2 months ago
- Single-cell analysis with non-negative matrix factorization☆48Jul 24, 2025Updated 8 months ago
- Dimensionality reduction and batch integration methods for single cell data☆16Feb 9, 2023Updated 3 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 4 years ago
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆40Sep 17, 2021Updated 4 years ago
- C++ implementation of the Diffusion Map, with Python bindings☆10Aug 22, 2017Updated 8 years ago
- ☆18Sep 10, 2025Updated 7 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆13Aug 7, 2023Updated 2 years ago
- SLICER algorithm for inferring cell trajectories. See details in Welch et al., Genome Biology 2016: http://genomebiology.biomedcentral.co…☆15Oct 17, 2017Updated 8 years ago
- MultiMAP for integration of single cell multi-omics☆55Nov 15, 2023Updated 2 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆46Jul 23, 2021Updated 4 years ago
- Cytofin-an R package for CyTOF data integration☆12Jan 13, 2022Updated 4 years ago
- AllenDigger, a tool for spatial expression data visualization, spatial heterogeneity delineation and single cell registration based on Al…☆14Apr 2, 2023Updated 3 years ago
- Regulatory networks with Direct Information in python☆40Mar 9, 2023Updated 3 years ago