sestaton / Transposome
A toolkit for annotation of transposable element families from unassembled sequence reads
☆30Updated last year
Alternatives and similar repositories for Transposome:
Users that are interested in Transposome are comparing it to the libraries listed below
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Hitting associations with k-mers☆45Updated 2 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆53Updated 4 months ago
- Conditional Reciprocal Best Blast☆42Updated 7 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆52Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated 8 months ago
- de novo virus assembler of Illumina paired reads☆55Updated 3 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 2 years ago
- Assembly by Reduced Complexity (ARC)☆41Updated 8 years ago
- Error correction for Illumina RNA-seq reads☆65Updated last year
- MIRA sequence assembler☆28Updated 2 months ago
- Ancient microbiome snakemake workflow☆22Updated 2 months ago
- 🔗Genome assembly scaffolder using minimizer graphs☆83Updated 5 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆36Updated last year
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- Merge transcriptome assemblies☆30Updated 8 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆59Updated 2 months ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated last year
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 3 years ago
- Rank-based Gene Ontology analysis of gene expression data☆40Updated 2 years ago
- FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds☆74Updated 4 years ago
- STAG: Species Tree from All Genes☆33Updated 6 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆65Updated 2 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated 2 years ago