stephaniehicks / scBatchPaperLinks
Code used for the single-cell RNA-Seq batch effects paper
☆10Updated 7 years ago
Alternatives and similar repositories for scBatchPaper
Users that are interested in scBatchPaper are comparing it to the libraries listed below
Sorting:
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆47Updated 5 years ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 4 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆32Updated 4 years ago
- HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Updated 6 years ago
- R package for benchmarking single cell analysis methods☆32Updated last year
- An R package for multi-dimensional pathway enrichment analysis☆16Updated 5 months ago
- Assessing the increase in power from increasing read depth in a given RNA-Seq study☆13Updated 6 years ago
- Integrating zingeR with ZINB-WaVE weights☆24Updated 7 years ago
- Calculation of distance metrics for matrices☆25Updated 6 years ago
- ☆62Updated 5 months ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆45Updated 2 years ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆40Updated last year
- A method to rapidly assess cell type identity using both functional and random gene sets☆13Updated 6 years ago
- ☆16Updated 6 years ago
- post-clustering differential expression test☆36Updated 6 years ago
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆31Updated 3 weeks ago
- Inference of switch-like differential expression along single-cell trajectories☆21Updated 7 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated 2 weeks ago
- Clone of the Bioconductor repository for the scRNAseq package.☆29Updated 7 months ago
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Updated 2 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆52Updated 4 years ago
- An r package that works as a wrapper to homologene☆46Updated last year
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆10Updated 3 years ago
- ☆55Updated 6 months ago
- The official repository of the Bioconductor 2019 Conference Workshops☆24Updated 2 years ago
- Independent Hypothesis Weighting☆15Updated last year
- distinct: a method for differential analyses via hierarchical permutation tests☆11Updated last year