stephaniehicks / scBatchPaperLinks
Code used for the single-cell RNA-Seq batch effects paper
☆10Updated 8 years ago
Alternatives and similar repositories for scBatchPaper
Users that are interested in scBatchPaper are comparing it to the libraries listed below
Sorting:
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆47Updated 2 weeks ago
- Assessing the increase in power from increasing read depth in a given RNA-Seq study☆13Updated 6 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 4 years ago
- R package for benchmarking single cell analysis methods☆32Updated 2 years ago
- Integrating zingeR with ZINB-WaVE weights☆24Updated 7 years ago
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆40Updated last year
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆31Updated last month
- The official repository of the Bioconductor 2019 Conference Workshops☆24Updated 2 years ago
- An R package for multi-dimensional pathway enrichment analysis☆16Updated 5 months ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆47Updated 2 years ago
- HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Updated 6 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆32Updated 4 years ago
- ☆16Updated 6 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated 2 weeks ago
- Tutorial for the analysis of scRNA-seq data in R☆18Updated 7 years ago
- ☆63Updated 6 months ago
- R package to identify genes with differential distributions in single-cell RNA-seq☆33Updated 3 years ago
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆10Updated 3 years ago
- Clone of the Bioconductor repository for the scRNAseq package.☆29Updated 8 months ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆13Updated 6 years ago
- Clone of the Bioconductor repository for the batchelor package.☆17Updated 6 months ago
- ☆55Updated 7 months ago
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆21Updated last year
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- repo to explore spatial data in R/Bioconductor and Python☆12Updated 5 years ago
- Independent Hypothesis Weighting☆15Updated 2 years ago
- Identify and correct invalid gene symbols☆59Updated 10 months ago
- Calculation of distance metrics for matrices☆26Updated 6 years ago