cbcrg / piper-nfLinks
RNA mapping pipeline
☆18Updated 7 years ago
Alternatives and similar repositories for piper-nf
Users that are interested in piper-nf are comparing it to the libraries listed below
Sorting:
- Please consider using/contributing to https://github.com/nf-core/sarek☆17Updated 6 years ago
- A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools☆23Updated 7 years ago
- Tools for bam file processing☆55Updated 10 years ago
- De novo assembly of nanopore reads using nextflow☆20Updated 5 years ago
- Analysis Framework for Biological Data from High Throughput Experiments☆34Updated 9 years ago
- Nextflow basic tutorial for newbie users☆33Updated 7 years ago
- reference free variant assembly☆34Updated 2 years ago
- Pipeline for poreathon☆14Updated 10 years ago
- See the main fork of this repository here >>>☆38Updated 6 months ago
- Analysis from kallisto paper☆32Updated 9 years ago
- Course material for the de novo assembly part of the INF-BIO9120 course at Univ. of Oslo Fall 2013☆37Updated 12 years ago
- ☆36Updated 5 years ago
- An automated ChIP-seq pipeline using Nextfow☆18Updated 3 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 6 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated last year
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Updated last week
- This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion☆21Updated 4 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- A series of tools and pipelines for genotyping MHC / HLA genes and alleles using SMRT Sequencing☆22Updated 9 years ago
- DEPRECIATED! Please use nf-core/tools instead☆19Updated 7 years ago
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 8 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)☆14Updated 8 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- Population Reference Graphs for the HLA and MHC.☆35Updated 6 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago