Alternatives and similar repositories for piper-nf

Users that are interested in piper-nf are comparing it to the libraries listed below

• nf-core / exoseq
  Please consider using/contributing to https://github.com/nf-core/sarek
  ☆17Updated 6 years ago
• cbcrg / kallisto-nf
  A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools
  ☆23Updated 7 years ago
• HadrienG / nanoflow
  De novo assembly of nanopore reads using nextflow
  ☆20Updated 5 years ago
• pachterlab / kallisto_paper_analysis
  Analysis from kallisto paper
  ☆32Updated 9 years ago
• BauerLab / ngsane
  Analysis Framework for Biological Data from High Throughput Experiments
  ☆34Updated 9 years ago
• ewels / nf-core-rnaseq
  See the main fork of this repository here >>>
  ☆38Updated 4 months ago
• DecodeGenetics / BamHash
  ☆36Updated 5 years ago
• gt1 / biobambam
  Tools for bam file processing
  ☆55Updated 10 years ago
• nextflow-io / rnatoy
  A proof of concept RNA-Seq pipeline with Nextflow
  ☆33Updated 4 years ago
• iqbal-lab / cortex
  reference free variant assembly
  ☆34Updated 2 years ago
• bioinform / breakseq2
  BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants
  ☆25Updated 9 years ago
• guigolab / chip-nf
  An automated ChIP-seq pipeline using Nextfow
  ☆18Updated 2 years ago
• nextflow-io / nf-hack17-tutorial
  Nextflow basic tutorial for newbie users
  ☆33Updated 7 years ago
• bnbowman / HlaTools
  A series of tools and pipelines for genotyping MHC / HLA genes and alleles using SMRT Sequencing
  ☆22Updated 9 years ago
• jcarrotzhang / LoLoPicker
  picking up low allelic-fraction, somatic variants from tumor samples
  ☆14Updated 7 years ago
• poreathon / poreathon
  Pipeline for poreathon
  ☆14Updated 10 years ago
• opencb / hpg-aligner
  HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment
  ☆34Updated 8 years ago
• lexnederbragt / INF-BIO9120_fall2013_de_novo_assembly
  Course material for the de novo assembly part of the INF-BIO9120 course at Univ. of Oslo Fall 2013
  ☆37Updated 11 years ago
• andrewjesaitis / variant-annotation-comparison-2017
  Work supporting the comparison of SnpEff and VEP effect prediction and HGVS identifiers
  ☆11Updated 8 years ago
• brentp / poverlap
  significance testing over interval overlaps
  ☆30Updated 5 years ago
• BenLangmead / qtip
  Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities
  ☆25Updated 5 years ago
• boutroslab / cld
  A software for the multispecies design of CRISPR/Cas9 libraries
  ☆36Updated 2 years ago
• karel-brinda / rnftools
  RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.
  ☆14Updated 6 years ago
• enasequence / cramtools
  CRAM format specification and java API for read data.
  ☆60Updated 6 years ago
• arq5x / nanopore-scripts
  Various scripts and recipes for working with nanopore data
  ☆34Updated 9 years ago
• hellosunking / Ktrim
  Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data
  ☆32Updated 8 months ago
• nf-core / cookiecutter
  DEPRECIATED! Please use nf-core/tools instead
  ☆19Updated 7 years ago
• IARCbioinfo / alignment-nf
  Whole Exome/Whole Genome Sequencing alignment pipeline
  ☆28Updated 11 months ago
• gkno / gkno_launcher
  The gkno launcher for executing tools or pipelines
  ☆31Updated 8 years ago
• DecodeGenetics / LRS_SV_sets
  VCF files of SVs using long-read sequencing (LRS).
  ☆22Updated 3 years ago