RNA mapping pipeline
☆18Jun 3, 2018Updated 7 years ago
Alternatives and similar repositories for piper-nf
Users that are interested in piper-nf are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Parallel Recipes : parallel workflow execution made easy☆13Sep 1, 2015Updated 10 years ago
- Consensus assembly and variant calling workflow.☆12May 26, 2015Updated 10 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Mar 4, 2019Updated 7 years ago
- A benchmarks of genomic pipelines running in Docker containers☆21Sep 3, 2015Updated 10 years ago
- Multi-sample somatic variant caller☆52Jan 27, 2022Updated 4 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆10Aug 29, 2018Updated 7 years ago
- Analysis Framework for Biological Data from High Throughput Experiments☆34Aug 24, 2016Updated 9 years ago
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Nov 10, 2025Updated 5 months ago
- Nextflow basic tutorial for newbie users☆33Jun 17, 2018Updated 7 years ago
- A proof of concept RNA-Seq pipeline with Nextflow☆33Jan 13, 2021Updated 5 years ago
- a simple C++ library for parsing and manipulating VCF files, + many command-line utilities☆20Mar 22, 2017Updated 9 years ago
- a simple lightweight workflow engine for data analysis scripting☆11Sep 5, 2019Updated 6 years ago
- Absolute Copy Number Estimation using low-coverage whole genome sequencing data☆20Oct 17, 2025Updated 5 months ago
- GATK4 Best Practice Nextflow Pipeline☆33Jan 18, 2018Updated 8 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A python script used to annotate genomic intervals.☆18May 29, 2020Updated 5 years ago
- This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion☆21Mar 22, 2021Updated 5 years ago
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11May 2, 2017Updated 8 years ago
- RNAseq analysis pipeline☆27Apr 1, 2026Updated 2 weeks ago
- Basic, no assumptions, multi-pileup☆24Mar 26, 2014Updated 12 years ago
- Pipeline for poreathon☆14Dec 17, 2014Updated 11 years ago
- An ultra light YAML-based pipeline execution engine☆20Aug 30, 2017Updated 8 years ago
- Day 2 of ACAD's 2018 Advanced Bioinformatics Workshop☆12Nov 27, 2018Updated 7 years ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 5 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- The MG-RAST Backend -- the API server☆46Apr 27, 2023Updated 2 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Oct 5, 2019Updated 6 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Jun 6, 2024Updated last year
- Request for comments on interchangeable bioinformatics containers☆39Jun 18, 2019Updated 6 years ago
- DEPRECIATED! Please use nf-core/tools instead☆19Aug 8, 2018Updated 7 years ago
- A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools☆23Jun 3, 2018Updated 7 years ago
- Isaac Genome Alignment Software☆36Apr 7, 2015Updated 11 years ago
- python module for querying the vicc knowledgebase integration datastore☆11Jul 6, 2023Updated 2 years ago
- amplicon/smMIP mapping and analysis pipeline☆11Dec 8, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Oct 6, 2020Updated 5 years ago
- A tool to detect structural variant☆17Mar 27, 2023Updated 3 years ago
- CRAM format specification and java API for read data.☆59Oct 2, 2018Updated 7 years ago
- Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows☆39Apr 1, 2026Updated 2 weeks ago
- Deep Variant as a Nextflow pipeline☆30Jul 24, 2020Updated 5 years ago
- A 10x faster version base on official trimmomatic. The results of trimmomatic-pigz are exactly the same with official trimmomatic.☆16Nov 20, 2024Updated last year
- NGS Language Bindings☆122Dec 6, 2023Updated 2 years ago