Alternatives and similar repositories for piper-nf

Users that are interested in piper-nf are comparing it to the libraries listed below

• nf-core / exoseq
  Please consider using/contributing to https://github.com/nf-core/sarek
  ☆17Updated 6 years ago
• cbcrg / kallisto-nf
  A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools
  ☆23Updated 7 years ago
• HadrienG / nanoflow
  De novo assembly of nanopore reads using nextflow
  ☆20Updated 5 years ago
• gt1 / biobambam
  Tools for bam file processing
  ☆55Updated 10 years ago
• BauerLab / ngsane
  Analysis Framework for Biological Data from High Throughput Experiments
  ☆34Updated 8 years ago
• pachterlab / kallisto_paper_analysis
  Analysis from kallisto paper
  ☆32Updated 9 years ago
• ewels / nf-core-rnaseq
  See the main fork of this repository here >>>
  ☆38Updated 3 months ago
• karel-brinda / rnftools
  RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.
  ☆14Updated 6 years ago
• iqbal-lab / cortex
  reference free variant assembly
  ☆33Updated 2 years ago
• bioinform / breakseq2
  BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants
  ☆24Updated 9 years ago
• DecodeGenetics / BamHash
  ☆37Updated 5 years ago
• wtsi-svi / ReadServer
  Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)
  ☆14Updated 7 years ago
• nextflow-io / nf-hack17-tutorial
  Nextflow basic tutorial for newbie users
  ☆33Updated 7 years ago
• jcarrotzhang / LoLoPicker
  picking up low allelic-fraction, somatic variants from tumor samples
  ☆14Updated 7 years ago
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆85Updated 4 years ago
• lganel / SVScore
  Prioritize structural variants based on CADD scores
  ☆29Updated 5 years ago
• lh3 / rtgeval
  Wrapper for RTG's vcfeval; DEPRECATED!
  ☆21Updated 9 years ago
• BenLangmead / qtip
  Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities
  ☆25Updated 5 years ago
• COMBINE-lab / RapClust
  Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes
  ☆31Updated last year
• lexnederbragt / INF-BIO9120_fall2013_de_novo_assembly
  Course material for the de novo assembly part of the INF-BIO9120 course at Univ. of Oslo Fall 2013
  ☆37Updated 11 years ago
• jhhung / PEAT
  An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.
  ☆22Updated 4 years ago
• nickloman / poredb
  ☆19Updated 8 years ago
• gzhmat / ShinyCNV
  a Shiny/R application to view and annotate copy number variations
  ☆28Updated 2 years ago
• poreathon / poreathon
  Pipeline for poreathon
  ☆14Updated 10 years ago
• aquaskyline / 16GT
  Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
  ☆27Updated last year
• gkno / gkno_launcher
  The gkno launcher for executing tools or pipelines
  ☆31Updated 8 years ago
• ssadedin / ximmer
  Ximmer is a system for CNV calling on exome and targeted genomic sequencing
  ☆19Updated last week
• tgen / LumosVar
  ☆11Updated 7 years ago
• nf-core / cookiecutter
  DEPRECIATED! Please use nf-core/tools instead
  ☆19Updated 7 years ago
• brentp / bigly
  a pileup library that embraces the huge
  ☆43Updated 4 years ago