cbcrg / piper-nfLinks
RNA mapping pipeline
☆18Updated 7 years ago
Alternatives and similar repositories for piper-nf
Users that are interested in piper-nf are comparing it to the libraries listed below
Sorting:
- A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools☆23Updated 7 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆18Updated 6 years ago
- Nextflow basic tutorial for newbie users☆33Updated 7 years ago
- Tools for bam file processing☆55Updated 10 years ago
- See the main fork of this repository here >>>☆38Updated 7 months ago
- Analysis Framework for Biological Data from High Throughput Experiments☆34Updated 9 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- Work supporting the comparison of SnpEff and VEP effect prediction and HGVS identifiers☆11Updated 8 years ago
- De novo assembly of nanopore reads using nextflow☆20Updated 5 years ago
- Analysis from kallisto paper☆32Updated 9 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- Cancer Genome Project Insertion/Deletion detection pipeline based around Pindel☆28Updated 6 months ago
- A community menagarie of automated variant validations using bcbio and the Common Workflow Language☆21Updated 4 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last month
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 8 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 6 years ago
- reference free variant assembly☆34Updated 2 years ago
- ☆36Updated 5 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Course material for the de novo assembly part of the INF-BIO9120 course at Univ. of Oslo Fall 2013☆37Updated 12 years ago
- ☆13Updated 8 years ago
- Nanopore desc☆18Updated 9 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- ☆11Updated 7 years ago
- A proof of concept RNA-Seq pipeline with Nextflow☆33Updated 4 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 3 years ago
- An automated ChIP-seq pipeline using Nextfow☆18Updated 3 years ago
- A series of tools and pipelines for genotyping MHC / HLA genes and alleles using SMRT Sequencing☆22Updated 9 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year