bioturing / heraLinks
☆71Updated 6 years ago
Alternatives and similar repositories for hera
Users that are interested in hera are comparing it to the libraries listed below
Sorting:
- Fast fusion detection using kallisto☆79Updated 4 months ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 8 years ago
- ☆78Updated 11 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- BigWig and BAM utilities☆97Updated last year
- Mapped QC analysis program☆44Updated 7 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- ☆82Updated 3 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- High-definition reconstruction of clonal composition from next-generation sequencing data☆41Updated 9 years ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year
- R package for inferring copy number from read depth☆32Updated 3 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- Response to blog post about Salmon☆37Updated 8 years ago
- Transcript quantification import with automatic metadata detection☆67Updated last week
- An automated RNA-seq pipeline using Nextflow☆37Updated last year
- An awk-like VCF parser☆56Updated last year
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆54Updated 8 years ago
- RNA-seq workflow: differential transcript usage☆23Updated 2 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 6 months ago
- A small R package to make sequencing read coverage plots in R.☆39Updated this week
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- Bioconductor package "polyester", devel version. RNA-seq read simulator.☆93Updated 4 years ago
- combining p-values using modified stouffer-liptak for spatially correlated results (probes)☆46Updated 3 years ago
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆61Updated 5 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at rea…☆26Updated 5 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago