anbrooks / juncBASELinks
Junction Based Analysis of Splicing Events for RNA-Seq
☆34Updated 4 months ago
Alternatives and similar repositories for juncBASE
Users that are interested in juncBASE are comparing it to the libraries listed below
Sorting:
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- chia pet analysis software☆25Updated 7 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year
- Genomic Association Tester☆35Updated 2 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- ☆13Updated 8 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 3 months ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- Tutorial Website☆63Updated 4 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆36Updated 10 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆31Updated 9 months ago
- An R package to time somatic mutations☆65Updated 5 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆72Updated last year
- A toolkit for working with ATAC-seq data.☆24Updated last year
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆77Updated last year
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated 3 months ago
- ☆18Updated 7 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆84Updated 11 months ago
- ☆39Updated 4 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- ☆72Updated 2 years ago
- A preprocessing and QC pipeline for HiChIP data☆40Updated 3 years ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆83Updated 7 months ago