anbrooks / juncBASELinks
Junction Based Analysis of Splicing Events for RNA-Seq
☆33Updated 2 months ago
Alternatives and similar repositories for juncBASE
Users that are interested in juncBASE are comparing it to the libraries listed below
Sorting:
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated last month
- ☆72Updated 2 years ago
- tools to find circRNAs in RNA-seq data☆44Updated 8 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆83Updated 10 months ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year
- ☆18Updated 6 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- Next-Gen Sequencing tools from the Horvath Lab☆44Updated 2 months ago
- ☆13Updated 8 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- A preprocessing pipeline for ChIP-seq, including alignment, quality control, and visualization.☆27Updated 8 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 4 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆37Updated 3 years ago
- A preprocessing and QC pipeline for HiChIP data☆40Updated 3 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆72Updated 11 months ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated last year
- Genomic Association Tester☆34Updated 2 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆77Updated last year
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated 2 months ago
- SingleCell Nanopore sequencing data analysis☆62Updated 6 months ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- snakemake workflow for post-processing scATACseq data☆22Updated 5 years ago