Junction Based Analysis of Splicing Events for RNA-Seq
☆34Apr 3, 2026Updated 2 months ago
Alternatives and similar repositories for juncBASE
Users that are interested in juncBASE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- isoCirc☆10Nov 27, 2023Updated 2 years ago
- Splicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data☆11Dec 11, 2025Updated 5 months ago
- Tool for the detection and quantification of alternative splicing events from RNA-Seq data.☆113Apr 13, 2026Updated last month
- RNA-Seq pipeline☆36Jul 22, 2015Updated 10 years ago
- A network-based approach for exon set enrichment☆15Jul 16, 2025Updated 10 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation☆140Dec 15, 2022Updated 3 years ago
- RNA-binding protein motif analysis☆11Sep 29, 2025Updated 8 months ago
- detection of mutations causing splicing change☆13Oct 6, 2022Updated 3 years ago
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated last year
- A tool to infer TF regulators for gene modules.☆10May 11, 2021Updated 5 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Apr 10, 2020Updated 6 years ago
- apa: research platform for the study of alternative polyadenylation, expressRNA.org☆12Sep 2, 2021Updated 4 years ago
- tools to find circRNAs in RNA-seq data☆47Nov 16, 2017Updated 8 years ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Jun 23, 2016Updated 9 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Exploring Isoform-specific interactions☆13Sep 16, 2025Updated 8 months ago
- splicing and feature maps for RBPs☆25Apr 26, 2026Updated last month
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆11May 12, 2025Updated last year
- Long read to rMATS☆32May 5, 2023Updated 3 years ago
- A computational workflow for exitron splicing identification☆16Aug 30, 2024Updated last year
- interactive visualization of single-cell transcriptomes☆11Mar 10, 2026Updated 3 months ago
- Easily draw publication-quality figures of splicing quantitative trait loci☆16Feb 2, 2018Updated 8 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆304Nov 6, 2025Updated 7 months ago
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆17Nov 29, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Primer Seek in RNA-Seq. Designs RT-PCR primers that validate alternative splicing events from RNA-Seq data.☆13Nov 27, 2016Updated 9 years ago
- ☆17Mar 2, 2019Updated 7 years ago
- eVITTA: an easy Visualization and Inference Toolbox for Transcriptome Analysis☆12Mar 23, 2024Updated 2 years ago
- A Python library to visualize and analyze long-read transcriptomes☆69Jan 19, 2026Updated 4 months ago
- A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data☆16Jun 17, 2020Updated 5 years ago
- Exon-exon splice junctions across SRA☆43Jul 30, 2021Updated 4 years ago
- PSI-Sigma☆42Nov 10, 2023Updated 2 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆43Jun 17, 2024Updated last year
- The Isoforms from Single-Cell; Long-read Expression Suite☆40Jan 14, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Lightweight and Fast; RNA-seq quantification at the event-level☆116May 9, 2025Updated last year
- k-mer Counter based on Multiple Burst Trees (multi-threaded)☆13Aug 31, 2016Updated 9 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆17Feb 21, 2024Updated 2 years ago
- R package to detect splicing QTLs (sQTLs)☆13Jul 3, 2023Updated 2 years ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆20Apr 24, 2024Updated 2 years ago
- Invertory of TE-gene isoforms☆14Sep 18, 2023Updated 2 years ago
- ☆24Updated this week