lh3 / asub
A unified array job submitter for LSF, SGE/UGE and Slurm
☆32Updated 4 months ago
Alternatives and similar repositories for asub:
Users that are interested in asub are comparing it to the libraries listed below
- Annotating principal splice isoforms☆14Updated 4 months ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆24Updated 5 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆52Updated 4 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- source code for HpcGridRunner☆17Updated 3 years ago
- Work for the tree sequence inference paper.☆23Updated 4 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 8 months ago
- Mapping-free variant caller for short-read Illumina data☆19Updated 4 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 2 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 3 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 5 years ago
- ☆16Updated 6 years ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆31Updated 6 years ago
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- my PhD thesis☆36Updated 5 years ago
- Pan gGnome Viewer☆10Updated last year
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- Cookiecutter profile for making a Snakemake-based bioinformatics tool, but without the fluff☆46Updated last year
- Naive PCA for genotype data☆10Updated 8 years ago
- Hybrid Error Correction of Long Reads using Iterative Learning☆10Updated 6 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 6 months ago
- Run shell commands in a scientifically reproducible and robust way☆15Updated 6 months ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- Scalable mpi aligner base on BWA☆7Updated 4 years ago
- A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools☆22Updated 6 years ago
- Rapid competitive read demulitplexer. Made with tries.☆24Updated last year