lh3 / asub
A unified array job submitter for LSF, SGE/UGE and Slurm
☆32Updated 3 months ago
Alternatives and similar repositories for asub:
Users that are interested in asub are comparing it to the libraries listed below
- Linear-time, low-memory construction of variation graphs☆18Updated 4 years ago
- ☆16Updated 6 years ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.☆22Updated 6 years ago
- reference free variant assembly☆32Updated last year
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 5 years ago
- Python bindings for Bifrost with a NetworkX compatible API☆28Updated last year
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆30Updated 7 months ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 4 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated this week
- adds sample names and read-group (RG) tags to BAM alignments☆52Updated 4 years ago
- Hidden Markov Model based Copy number caller☆20Updated 3 months ago
- Population-wide Deletion Calling☆35Updated 4 months ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Updated 10 months ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated last year
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated last year
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Updated 6 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shar…☆27Updated 8 months ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 6 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated last year
- ☆28Updated last year
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆31Updated 6 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆24Updated 5 years ago
- ☆11Updated last year
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 2 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago