A unified array job submitter for LSF, SGE/UGE and Slurm
☆32Oct 15, 2024Updated last year
Alternatives and similar repositories for asub
Users that are interested in asub are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R package to call oomycete effectors☆11Aug 31, 2023Updated 3 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23May 19, 2025Updated last year
- Tutorial on programming or "big data"/bioinformatics☆32Jan 5, 2018Updated 8 years ago
- file command's magic pattern file for bioinformatics☆21Nov 25, 2015Updated 10 years ago
- A collection of bioinformatics file format specimens to test against☆47Jan 7, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Easily submitting multiple PBS jobs or running local jobs in parallel. Multiple input files supported.☆29May 24, 2023Updated 3 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Aug 27, 2019Updated 7 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆18Mar 3, 2026Updated 7 months ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago
- Very very long reads, indeed☆13Apr 30, 2017Updated 9 years ago
- Naive PCA for genotype data☆10Jul 27, 2016Updated 10 years ago
- efficient alignment of strings to partially ordered string graphs☆33Apr 22, 2026Updated 5 months ago
- GFF toolkit☆17May 23, 2026Updated 4 months ago
- Mapping-free variant caller for short-read Illumina data☆21Apr 2, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆13Jun 24, 2016Updated 10 years ago
- Shape analysis of high-throughput data☆19Feb 24, 2016Updated 10 years ago
- An MPI Toolkit for large-scale genomic analysis☆16Feb 29, 2016Updated 10 years ago
- All JBrowse plugins created by Brigitte Hofmeister☆10Apr 27, 2018Updated 8 years ago
- Abbreviate strings to short, unique identifiers☆24May 10, 2022Updated 4 years ago
- Day 2 of ACAD's 2018 Advanced Bioinformatics Workshop☆12Nov 27, 2018Updated 7 years ago
- comparative genome dot plot viewer☆10May 19, 2019Updated 7 years ago
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆23Oct 28, 2025Updated 11 months ago
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11May 2, 2017Updated 9 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- apache2 modules for bioinformatics.☆18Sep 15, 2014Updated 12 years ago
- Fast and space-efficient taxonomic classification of long reads☆46Jul 16, 2026Updated 2 months ago
- python wrapper to dpryan79's bigwig library using cffi☆19May 13, 2016Updated 10 years ago
- Tool for exploring sequence alignment algorithms☆14Aug 30, 2024Updated 2 years ago
- An Expectation-Maximization algorithm to infer mutational signatures☆27Nov 16, 2016Updated 9 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆110Nov 30, 2020Updated 5 years ago
- A high-performance search engine for large-scale genomic interval datasets☆20Sep 1, 2021Updated 5 years ago
- High-performance error correction for Illumina resequencing data☆75May 31, 2016Updated 10 years ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Apr 29, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Subsampling of high-throughput sequencing count data☆20May 10, 2019Updated 7 years ago
- A program to call variants from genome alignment☆84Apr 29, 2025Updated last year
- Sample an approximate number of reads from a fastq file without reading the entire file☆11Jun 20, 2017Updated 9 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆48Jul 24, 2025Updated last year
- Parallel MCMC implementation, the core package of the Quantifying Uncertainty project☆15Feb 27, 2017Updated 9 years ago
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆46Jun 16, 2026Updated 3 months ago
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆60Sep 5, 2017Updated 9 years ago