lh3 / asubLinks
A unified array job submitter for LSF, SGE/UGE and Slurm
☆32Updated 9 months ago
Alternatives and similar repositories for asub
Users that are interested in asub are comparing it to the libraries listed below
Sorting:
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆16Updated last year
- reference free variant assembly☆33Updated 2 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- Mapping-free variant caller for short-read Illumina data☆19Updated 5 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆34Updated last year
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- ☆16Updated 7 years ago
- GBWT-based handle graph☆31Updated last month
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 10 months ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 4 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Naive PCA for genotype data☆10Updated 9 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆24Updated 6 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 5 years ago
- Work for the tree sequence inference paper.☆22Updated 4 years ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- DNA assembler developed on FER (Croatia), RBI (Croatia) and GIS (Singapore)☆18Updated 9 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 7 years ago
- Identification of structural variations☆12Updated 3 years ago
- maze: match visualizer☆9Updated 3 years ago
- 🍶 Genome assembly with short sequence reads☆25Updated last year