Shape analysis of high-throughput data
☆19Feb 24, 2016Updated 10 years ago
Alternatives and similar repositories for HTShape
Users that are interested in HTShape are comparing it to the libraries listed below
Sorting:
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Oct 8, 2021Updated 4 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Jun 4, 2024Updated last year
- python wrapper to dpryan79's bigwig library using cffi☆19May 13, 2016Updated 9 years ago
- Dynamic statistical comparisons in R☆17Jun 29, 2018Updated 7 years ago
- EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding o…☆71Mar 1, 2023Updated 3 years ago
- ☆12Jul 30, 2022Updated 3 years ago
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆47Jul 12, 2020Updated 5 years ago
- ☆15Mar 7, 2016Updated 10 years ago
- ☆12Feb 19, 2017Updated 9 years ago
- ☆10Dec 12, 2017Updated 8 years ago
- YARN: Robust Multi-Tissue RNA-Seq Preprocessing and Normalization☆13Mar 4, 2024Updated 2 years ago
- R package for annotating metagenomic datasets with taxonomic information☆10Feb 11, 2020Updated 6 years ago
- Snakemake library for bioinformatics programs, with a focus on next-generation sequencing☆22Feb 4, 2016Updated 10 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Jan 19, 2021Updated 5 years ago
- Directly create a bigwig file with signal derived from a sorted and indexed bam file.☆11Jul 7, 2017Updated 8 years ago
- Simulation and power calculations for time-to-event trials☆18May 21, 2020Updated 5 years ago
- User-friendly Bioinformatics Tools☆18Mar 5, 2021Updated 5 years ago
- Various Ideas for Confounder Adjustment in Regression☆24May 8, 2023Updated 2 years ago
- Subset of Galaxy (http://galaxyproject.org/) core code designed to be used as a library.☆12Jul 22, 2020Updated 5 years ago
- A tool for Read Multi-Mapper Resolution☆24Feb 15, 2017Updated 9 years ago
- An algorithm for clonal tree reconstruction from multi-sample cancer sequencing data☆14Apr 1, 2018Updated 7 years ago
- Log command line events to a graph database :)☆13Mar 12, 2016Updated 10 years ago
- Efficient handling of FASTQ files from Python☆51Nov 28, 2025Updated 3 months ago
- COmplex Network Description Of Regulators, an R package for bipartite network analysis☆12Jul 5, 2019Updated 6 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆27Oct 11, 2025Updated 5 months ago
- A platform for World Wide Computing☆65Apr 16, 2015Updated 10 years ago
- ☆28Oct 5, 2018Updated 7 years ago
- Multivariate adaptive shrinkage methods used for analysis GTEx data in Urbut et al (2017).☆12Sep 25, 2017Updated 8 years ago
- A configurable de novo assembly pipeline☆29Jun 29, 2016Updated 9 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆31Oct 9, 2017Updated 8 years ago
- ☆43Apr 20, 2016Updated 9 years ago
- Mostly useful scripts and files for processing MiSeq amplicon data☆18Jul 1, 2016Updated 9 years ago
- Deep Zoom Image Downloader☆22Feb 20, 2026Updated last month
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆52Nov 5, 2022Updated 3 years ago
- Wishbone is an algorithm to align cells along developmental trajectories with branches☆42Feb 8, 2020Updated 6 years ago
- Bayesian Multitask Multiple Kernel Learning☆18Mar 17, 2018Updated 8 years ago
- Tutorial on programming or "big data"/bioinformatics☆32Jan 5, 2018Updated 8 years ago