xguse / blacktieLinks
Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline
☆26Updated 9 years ago
Alternatives and similar repositories for blacktie
Users that are interested in blacktie are comparing it to the libraries listed below
Sorting:
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Benchmarks for RNA-seq quantification pipelines☆8Updated 5 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆14Updated 11 years ago
- ☆12Updated last month
- Chromatin segmentation in R☆19Updated 7 years ago
- R package to quickly obtain count vectors from indexed bam files☆15Updated 3 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 6 years ago
- A python script used to annotate genomic intervals.☆18Updated 5 years ago
- XL-mHG: A Semiparametric Test for Enrichment in Ranked Lists.☆13Updated 2 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- Machine learning use cases for teaching☆13Updated 7 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- Correctly counting molecules using unique molecular identifiers (UMIs)☆9Updated 3 years ago
- ☆12Updated 2 weeks ago
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 3 weeks ago
- Allele frequency filter app☆14Updated 3 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Updated 7 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 7 years ago
- ☆12Updated last year
- Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.☆11Updated 7 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- integrative pathway analysis with modern PCA methodology and gene selection☆11Updated last year
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 7 years ago
- Stupid Simple Elastic Compute Cloud☆16Updated last year
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago