karel-brinda / rnftoolsView external linksLinks
RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.
☆14Nov 10, 2025Updated 3 months ago
Alternatives and similar repositories for rnftools
Users that are interested in rnftools are comparing it to the libraries listed below
Sorting:
- Error correction and variant calling algorithm for nanopore sequencing☆26Apr 23, 2016Updated 9 years ago
- Simple and quick FastQ and FastA tool for file reading and conversion☆17Jul 11, 2014Updated 11 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Oct 8, 2021Updated 4 years ago
- Chromatin segmentation in R☆19Feb 4, 2018Updated 8 years ago
- Gordon's Text utils Library☆10Apr 11, 2022Updated 3 years ago
- ☆12Jan 21, 2016Updated 10 years ago
- DeeNA Zip (SAM/BAM compression tool)☆13May 25, 2019Updated 6 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Aug 19, 2017Updated 8 years ago
- Peakzilla is a self-learning algorithm to identify transcription factor binding sites from ChIP-seq data. I would be very happy if you tr…☆21Aug 18, 2025Updated 5 months ago
- R package to quickly obtain count vectors from indexed bam files☆15Jun 13, 2025Updated 8 months ago
- SNAPR: a bioinformatics pipeline for efficient and accurate RNA-seq alignment and analysis☆25Apr 7, 2015Updated 10 years ago
- RNA mapping pipeline☆18Jun 3, 2018Updated 7 years ago
- GEMTools main repository☆17Jun 21, 2022Updated 3 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Jan 18, 2019Updated 7 years ago
- de Bruijn Graph REAd mapping Tool☆14Jul 12, 2017Updated 8 years ago
- Read alignment with a multi-genome reference☆23Jan 14, 2020Updated 6 years ago
- A program for summarising CpG methylation patterns☆20Sep 9, 2016Updated 9 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Dec 11, 2017Updated 8 years ago
- Pacbio sequence alignment tool, please use "git clone" to copy and use the repository☆18Feb 17, 2019Updated 6 years ago
- Compressive Read-mapping Accelerator☆14Sep 7, 2016Updated 9 years ago
- Additional tools for analyzing Oxford Nanopore minION data☆17Jul 24, 2015Updated 10 years ago
- Fast API server for calculating linkage disequilibrium☆20Apr 24, 2025Updated 9 months ago
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆16Apr 12, 2014Updated 11 years ago
- Integrated Variant Caller☆17Mar 15, 2018Updated 7 years ago
- Q ChIP-seq peak caller☆18Jul 17, 2024Updated last year
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Jun 23, 2016Updated 9 years ago
- A Perl extension and collection of utilities for Next-Generation Sequencing (NGS) data analysis☆23Oct 31, 2025Updated 3 months ago
- Scotch pipeline for indel calling.☆10Nov 25, 2019Updated 6 years ago
- RNA-Seq Unified Mapper☆27Sep 9, 2022Updated 3 years ago
- Analysis tool for Nanopore sequencing data☆34Apr 15, 2019Updated 6 years ago
- A tool for Read Multi-Mapper Resolution☆24Feb 15, 2017Updated 9 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Jan 19, 2021Updated 5 years ago
- NGS perl modules☆11Feb 4, 2026Updated last week
- Implementation of the Tower Method, a novel approach to handling missing values.☆12Mar 12, 2024Updated last year
- scripts for analysis associated with Cas9Enrichment publication☆12Feb 10, 2020Updated 6 years ago
- Processing and analysis of data coming from Illumina sequencing machines☆10Jan 6, 2026Updated last month
- Estimation of pairwise distances under a probabilistic framework☆11Aug 11, 2023Updated 2 years ago
- A fast and efficient short read mapper☆13Nov 7, 2021Updated 4 years ago
- Applying IDR analysis to Homer peaks.☆15May 8, 2020Updated 5 years ago