lexnederbragt / INF-BIO9120_fall2013_de_novo_assemblyLinks
Course material for the de novo assembly part of the INF-BIO9120 course at Univ. of Oslo Fall 2013
☆37Updated 12 years ago
Alternatives and similar repositories for INF-BIO9120_fall2013_de_novo_assembly
Users that are interested in INF-BIO9120_fall2013_de_novo_assembly are comparing it to the libraries listed below
Sorting:
- Public Health England SNP calling pipeline.☆37Updated 7 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 6 years ago
- reference free variant assembly☆34Updated 2 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- ☆18Updated 8 years ago
- ☆18Updated 9 years ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Updated 6 years ago
- Utility program for extracting sequences from a fasta/fastq file☆35Updated 10 months ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- Visualise interstrain recombination from environmental samples.☆26Updated 6 years ago
- blast, shmlast☆21Updated 5 years ago
- de novo targeted gene assembly☆23Updated 4 years ago
- FAST: Fast Analysis of Sequences Toolbox☆31Updated 6 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated 5 months ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated 3 months ago
- Mapping-free variant caller for short-read Illumina data☆20Updated 5 years ago
- full taxonomer cython repository☆22Updated 5 years ago
- Read nanopore sequence reads in real-time☆14Updated 8 years ago
- Using kallisto for metagenomic analysis☆49Updated 8 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Updated 7 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Genomic Assemblies Merger for NGS☆26Updated last year
- Northern Arizona SNP Pipeline☆20Updated last year
- ☆10Updated 10 years ago
- Analysis pipeline for functional metagenomic sequencing data obtained using nanopore sequencing☆12Updated 8 years ago
- A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis☆10Updated 9 years ago
- Fast but inaccurate adapter trimmer for Illumina reads☆16Updated 3 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated last month
- Confirming specific taxonomic groups within your samples.☆19Updated 4 years ago