putonti / virMineLinks
☆18Updated 3 years ago
Alternatives and similar repositories for virMine
Users that are interested in virMine are comparing it to the libraries listed below
Sorting:
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated last year
- Prophage Activity Estimator☆26Updated last year
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆42Updated last week
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆29Updated 8 months ago
- ☆52Updated 2 weeks ago
- Taxonomic classification of viruses at Order and Family level☆20Updated 2 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆32Updated 2 years ago
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago
- Discover and annotate the virome☆44Updated 2 weeks ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36Updated 2 months ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- Order and orientation of complete bacterial genomes☆28Updated last week
- scripts for microbiome analysis☆11Updated 11 months ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Updated 2 years ago
- IslandPath standalone software☆33Updated last year
- ☆32Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated this week
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- Extract metadata from biosamples in NCBI☆16Updated 4 years ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- ☆20Updated 10 months ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- Identify phage regions in bacterial genomes for masking purposes☆33Updated 5 years ago
- ☆25Updated 6 years ago
- A toolkit for prokaryotic comparative genomics☆49Updated 5 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆37Updated 3 years ago
- MAG Circularization Method☆33Updated 3 years ago