☆18Apr 6, 2022Updated 3 years ago
Alternatives and similar repositories for virMine
Users that are interested in virMine are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- FastViromeExplorer project. Forked from https://code.vt.edu/saima5/FastViromeExplorer☆14Jul 2, 2019Updated 6 years ago
- VirusSeeker is a set of fully automated and modular software package designed for mining sequence data to identify sequences of microbial…☆18Oct 31, 2017Updated 8 years ago
- Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)☆55Jan 19, 2024Updated 2 years ago
- A tool for identifying phages and plasmids from metagenomic fragments using deep learning☆44Apr 13, 2021Updated 4 years ago
- C++ tools for NCBI taxonomy tasks☆12Jun 26, 2025Updated 8 months ago
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Aug 13, 2020Updated 5 years ago
- WtP: Phage identification via nextflow and docker or singularity☆104Updated this week
- Set of tools for viral metagenomics.☆14Jan 21, 2026Updated 2 months ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Mar 14, 2024Updated 2 years ago
- VirHostMatcher-Net: A network-based computational tool for predicting virus-host interactions.☆19Mar 8, 2026Updated 2 weeks ago
- MARVEL: Metagenomic Analyses and Retrieval of Viral ELements☆51Apr 19, 2024Updated last year
- Quality control plotting for long reads☆10May 14, 2024Updated last year
- Source code of the VirSorter tool, also available as an App on CyVerse/iVirus (https://de.iplantcollaborative.org/de/)☆101Oct 3, 2020Updated 5 years ago
- MetaCarvel: A scaffolder for metagenomes☆14Sep 17, 2024Updated last year
- ☆10Jul 23, 2020Updated 5 years ago
- viralFlye pipeline☆18Aug 12, 2024Updated last year
- Identifying viruses from metagenomic data by deep learning☆150Jun 1, 2025Updated 9 months ago
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Dec 20, 2021Updated 4 years ago
- VirHostMatcher: matching hosts of viruses based on oligonucleotide frequency (ONF) comparison☆31Jul 28, 2018Updated 7 years ago
- Visualization tool for (meta)genome assembly graphs☆40Updated this week
- In silico serotyping, finetyping and Bexsero antigen sequence typing of Neisseria meningitidis☆15Feb 19, 2026Updated last month
- ☆33Jul 14, 2021Updated 4 years ago
- This is the complete code base used in Robert A. Edwards, Katelyn McNair, Karoline Faust, Jeroen Raes, and Bas E. Dutilh (2015) Computati…☆17Nov 7, 2021Updated 4 years ago
- Discover and annotate the virome☆59Feb 11, 2026Updated last month
- The genome annotation service provides automated gene annotation based on the RAST system. This deploys both client and service component…☆11Sep 22, 2020Updated 5 years ago
- VirNet: A deep attention model for viral reads identification☆30Nov 16, 2021Updated 4 years ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Jun 28, 2021Updated 4 years ago
- Taxonomic classification of viruses at Order and Family level☆21Mar 1, 2023Updated 3 years ago
- ☆11Sep 16, 2020Updated 5 years ago
- ☆14Jan 31, 2026Updated last month
- VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data☆137Apr 9, 2020Updated 5 years ago
- ☆25Feb 21, 2017Updated 9 years ago
- Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.☆11May 19, 2020Updated 5 years ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆86Dec 27, 2024Updated last year
- ☆38Dec 6, 2023Updated 2 years ago
- Automatically calculate phylogenetic trees from bacterial core genes☆20May 13, 2025Updated 10 months ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆24Oct 16, 2024Updated last year
- hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data☆13Jul 12, 2024Updated last year
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆23Mar 22, 2024Updated 2 years ago