putonti / virMineLinks
☆18Updated 3 years ago
Alternatives and similar repositories for virMine
Users that are interested in virMine are comparing it to the libraries listed below
Sorting:
- Prophage Activity Estimator☆28Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 3 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- MAG Circularization Method☆32Updated 2 weeks ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆31Updated last month
- Calculate assocations between genes and traits☆29Updated 8 months ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆12Updated last month
- Extract metadata from biosamples in NCBI☆16Updated 4 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 3 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆51Updated last year
- Taxonomic classification of viruses at Order and Family level☆21Updated 2 years ago
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆19Updated 5 years ago
- ☆20Updated last year
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated 2 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 6 months ago
- Discover and annotate the virome☆53Updated last month
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Automatic eukaryotic taxonomic classification☆28Updated 6 months ago
- MAGScoT - a MAG scoring and refinement tool☆37Updated last year
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- ☆33Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆67Updated this week
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Updated 2 years ago