jnoms / virID
Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.
☆11Updated 4 years ago
Alternatives and similar repositories for virID:
Users that are interested in virID are comparing it to the libraries listed below
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 2 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆38Updated 3 years ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆30Updated last year
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated last year
- A very simple BLAST filtering pipeline☆18Updated 10 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆20Updated 2 months ago
- ☆28Updated 7 months ago
- Find Unique genomic Regions☆29Updated last week
- Symmetric DUST for finding low-complexity regions in DNA sequences☆34Updated last year
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated last year
- ✏️ Genome assembly polishing & SNV detection☆64Updated last month
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆33Updated last year
- ☆26Updated last month
- Trimming tool for Oxford Nanopore sequence data☆22Updated 3 years ago
- Toolkit for preparing genomes for submission to NCBI☆29Updated 3 years ago
- Assembly by Reduced Complexity (ARC)☆41Updated 8 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆52Updated 2 months ago
- A set of scripts for calculating pairwise SNP distance☆38Updated last year
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year
- A tutorial on structural variant calling for short read sequencing data☆26Updated 2 months ago
- ☆10Updated 12 years ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆31Updated 6 months ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 4 months ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 3 years ago
- Workshop on Genomics - Genomics Adventure☆38Updated this week
- Flexible circular visualization of genome-associated data with BioPerl and SVG.☆47Updated 5 years ago
- ☆18Updated 10 months ago