a toolkit for evaluation of the lenght of k-mer in a given genome dataset for alignment-free phylogenimic analysis.
☆15Nov 21, 2024Updated last year
Alternatives and similar repositories for kitsune
Users that are interested in kitsune are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 4 years ago
- ☆20Sep 16, 2026Updated last month
- Estimate node ages of a phylogeny by approximating the phylogenetic likelihood with a multivariate normal distribution.☆13Jun 23, 2025Updated last year
- REINDEER REad Index for abuNDancE quERy☆57Jul 6, 2025Updated last year
- Detecting Archaic Introgression from Population Genetic Data with S*☆10Aug 9, 2026Updated 2 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Mar 26, 2023Updated 3 years ago
- MetaProFi is a bloom filter based tool for storing and querying sequence data for accurate identification of functionally relevant geneti…☆13Apr 14, 2022Updated 4 years ago
- Detection of outlier genes and species in phylogenomics☆19Oct 8, 2026Updated 3 weeks ago
- Fast alignment tool based on bwa-mem☆29Feb 22, 2026Updated 8 months ago
- Command Line Interface for Genomes on a Tree.☆14Oct 8, 2026Updated 3 weeks ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Sep 13, 2019Updated 7 years ago
- ☆21Dec 13, 2023Updated 2 years ago
- ☆10Jun 13, 2020Updated 6 years ago
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆13Dec 20, 2022Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Compute hash digests for DNA sequences in a FASTA file☆13May 31, 2026Updated 5 months ago
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated 2 years ago
- A repository for generating strobemers and evalaution☆79Apr 16, 2024Updated 2 years ago
- Cantù Lab @ UC Davis - Annotation pipeline - EVM based☆15Nov 1, 2024Updated 2 years ago
- ☆19May 10, 2023Updated 3 years ago
- Clann: Investigation of phylogenomic signal using supertrees☆18Jul 25, 2026Updated 3 months ago
- High-fidelity 5mC DNA methylation detection model for PacBio HiFi reads☆16Apr 10, 2026Updated 6 months ago
- Phylogenetic Clustering (Phyloclustering)☆10Sep 6, 2023Updated 3 years ago
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Jul 24, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- MONI: A Pangenomic Index for Finding MEMs☆38Mar 25, 2025Updated last year
- Nullomers Assessor: A computational method for statistical evaluation of nullomers & minimal absent words☆10Feb 20, 2023Updated 3 years ago
- ☆27Updated this week
- K-mer based classifier for Y-contig identification from Whole Genome Assemblies☆14Feb 19, 2020Updated 6 years ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆48Sep 28, 2023Updated 3 years ago
- Wavefront alignment algorithm (WFA) in Golang☆33Updated this week
- ☆14Jul 30, 2026Updated 3 months ago
- AncestralClust☆13Jul 9, 2025Updated last year
- Ascertained Sequentially Markovian Coalescent☆19Oct 23, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- An innovative GWAS procedure for studies on germplasm population and plant breeding☆14Nov 16, 2020Updated 5 years ago
- Fast Tandem Repeat Finder☆20Aug 9, 2026Updated 2 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆40Aug 20, 2026Updated 2 months ago
- Gene-tree Reconciliation Algorithm with MUL-trees for Polyploid Analysis☆16Jul 25, 2025Updated last year
- Sorting Intolerant From Tolerant For Genomes☆33Nov 3, 2017Updated 8 years ago
- Simulating paired-end short sequencing reads from circular and linear genomes☆17May 14, 2021Updated 5 years ago
- A phylogeny dating method using least-squares algorithms and criteria☆37Oct 25, 2024Updated 2 years ago