VAriant Mapping and Prediction of antimicrobial resistance
☆12Jun 8, 2026Updated 4 months ago
Alternatives and similar repositories for VAMPr
Users that are interested in VAMPr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Dec 28, 2019Updated 6 years ago
- microbial association network clustering algorithm☆14Dec 14, 2023Updated 2 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- Prediction of horizontal gene transfer (HGT) using graph convolutional network☆13Apr 25, 2022Updated 4 years ago
- ☆13Apr 5, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆15Mar 14, 2023Updated 3 years ago
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆13Feb 10, 2026Updated 8 months ago
- Scalable high-throughput short-read open reading frame prediction☆12Jan 13, 2017Updated 9 years ago
- Code for doing MIC predictions on genomes☆42Dec 5, 2019Updated 6 years ago
- A library of Machine Learning tools to predict antibiotic resistance from NGS data☆18May 30, 2022Updated 4 years ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆16Oct 11, 2023Updated 3 years ago
- Code repository for machine learning and computational analysis of large-scale microbial genomics data (https://rdcu.be/9rHj)☆20May 12, 2025Updated last year
- Computational pipelines for processing of paired-end Illumina reads☆11Dec 11, 2023Updated 2 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Aug 23, 2023Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Repository of the integrated mouse gut metagenomic catalog☆20Mar 14, 2022Updated 4 years ago
- ☆21Dec 15, 2020Updated 5 years ago
- hybrid assembly and differential binning workflow for metagenomics, transcriptomics and pathway analysis☆71Feb 9, 2025Updated last year
- ** Blood metabolome predicts gut microbiome α-diversity in humans**☆24Sep 23, 2019Updated 7 years ago
- Computational pipeline for calling consensi on R2C2 nanopore data☆10Oct 2, 2025Updated last year
- StrainFinder☆29Jul 8, 2018Updated 8 years ago
- A visualization tool for Systems-Level Interactive Data Exploration☆13Jan 12, 2022Updated 4 years ago
- Assemble the Genome in a Bottle sequencing data☆10Aug 4, 2017Updated 9 years ago
- Suite of analysis tools for spatial total RNA-sequencing☆13Aug 10, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Deep Filter Banks for Texture Recognition, Description and Segmentation (CVPR15)☆10Jan 22, 2018Updated 8 years ago
- Plot multiple sequence alignment (MSA)☆17Apr 21, 2026Updated 6 months ago
- Metagenomic Markov Models for Antimicrobial Resistance Characterization - Source code☆11Jun 25, 2019Updated 7 years ago
- the Metagenomic test for Presence Or Absence of Pathways☆13Mar 4, 2019Updated 7 years ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Jun 28, 2021Updated 5 years ago
- Profiler for metagenomics based on NGLess☆14Feb 22, 2024Updated 2 years ago
- Multi-omics data normalisation, model fitting and visualisation.☆27Apr 6, 2023Updated 3 years ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆15Jun 5, 2026Updated 4 months ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆21Aug 13, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆40Sep 22, 2022Updated 4 years ago
- Command line client and Python libraries for CosmosID API☆13Oct 28, 2025Updated last year
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆14Jul 2, 2022Updated 4 years ago
- ☆12Feb 26, 2019Updated 7 years ago
- VirNet: A deep attention model for viral reads identification☆30Nov 16, 2021Updated 4 years ago
- STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed spe…☆18May 4, 2026Updated 5 months ago
- 16S rRNA Sequencing Data from the Human Microbiome Project☆11May 14, 2026Updated 5 months ago