carolzhou / multiPhATE
Throughput PhATE processing of draft or finished phage genomes
☆14Updated 3 years ago
Alternatives and similar repositories for multiPhATE:
Users that are interested in multiPhATE are comparing it to the libraries listed below
- EzAAI - High Throughput Prokaryotic AAI Calculator☆38Updated 5 months ago
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago
- Gene Absence Presence Identification tool.☆26Updated this week
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated 11 months ago
- IslandPath standalone software☆31Updated last year
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆26Updated 2 weeks ago
- Downstream processing of VAMB binning for Viral Elucidation☆48Updated 8 months ago
- A python library for predicting phage lifestyle based on genome sequence☆37Updated last year
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆60Updated 2 months ago
- Unified Human Gut Virome Catalog☆28Updated 8 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆58Updated last month
- A simple program to classify the lifestyle of phages.☆17Updated last year
- Small utility script to submit genomes to PHASTER for phage detection☆24Updated 3 years ago
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆33Updated 3 years ago
- Discover and annotate the virome☆39Updated 5 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆59Updated last month
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- ☆37Updated last year
- ☆31Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆44Updated 3 weeks ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆55Updated 3 weeks ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆38Updated 5 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆33Updated last month
- all methods related to Enterobase☆40Updated 6 months ago
- Prophage Activity Estimator☆26Updated 10 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- Predict MLST directly from uncorrected long reads☆27Updated 3 years ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago