carolzhou / multiPhATE
Throughput PhATE processing of draft or finished phage genomes
☆14Updated 3 years ago
Alternatives and similar repositories for multiPhATE:
Users that are interested in multiPhATE are comparing it to the libraries listed below
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆51Updated last month
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated 9 months ago
- A tool for removing redundant genomes from a set of assemblies☆70Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆37Updated 3 months ago
- A simple program to classify the lifestyle of phages.☆16Updated last year
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago
- Discover and annotate the virome☆35Updated 3 months ago
- Prophage Activity Estimator☆26Updated 7 months ago
- IslandPath standalone software☆31Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated last year
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆44Updated last month
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆25Updated 2 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆54Updated 4 months ago
- Small pipeline to cluster viral genomes based on their k-mer content. WiP☆16Updated 2 weeks ago
- ☆31Updated last year
- A toolkit for prokaryotic comparative genomics☆38Updated 2 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 3 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 5 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆56Updated this week
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆31Updated 2 years ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆53Updated 3 weeks ago
- Downstream processing of VAMB binning for Viral Elucidation☆47Updated 6 months ago
- ☆37Updated last year
- Gene Absence Presence Identification tool.☆26Updated last year
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆18Updated 9 months ago
- Binning Virus Genomes from Metagenomes☆59Updated 2 years ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆20Updated last year
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 3 years ago
- ☆25Updated 11 months ago