carolzhou / multiPhATELinks
Throughput PhATE processing of draft or finished phage genomes
☆14Updated 4 years ago
Alternatives and similar repositories for multiPhATE
Users that are interested in multiPhATE are comparing it to the libraries listed below
Sorting:
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆74Updated 2 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆61Updated 7 months ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆35Updated this week
- A python library for predicting phage lifestyle based on genome sequence☆37Updated 2 years ago
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 6 years ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆49Updated last month
- Unified Human Gut Virome Catalog☆36Updated last month
- Small utility script to submit genomes to PHASTER for phage detection☆24Updated 3 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆77Updated 3 weeks ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- A toolkit for prokaryotic comparative genomics☆51Updated this week
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 2 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆63Updated last week
- A simple program to classify the lifestyle of phages.☆17Updated 2 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- Discover and annotate the virome☆53Updated last week
- Prediction of prophages from bacterial genomes☆81Updated 4 months ago
- Bifrost graph gene caller.☆95Updated 3 weeks ago
- Binning Virus Genomes from Metagenomes☆66Updated 3 years ago
- IslandPath standalone software☆33Updated last year
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆85Updated 5 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆51Updated last week
- Gene Absence Presence Identification tool.☆27Updated 6 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 5 months ago
- A tool for removing redundant genomes from a set of assemblies☆77Updated last month
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆63Updated 6 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆81Updated this week
- Comparisons of multiple different prophage predictions☆26Updated 3 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago