genome sized sequences clustering
☆16Dec 29, 2020Updated 5 years ago
Alternatives and similar repositories for gclust
Users that are interested in gclust are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Taxonomy classification of viral sequences / contigs☆13Jul 15, 2025Updated last year
- Chimera: A Versatile Metagenomic Classification Tool☆21Oct 8, 2026Updated last week
- A repo with just adapter sequences☆14Jul 7, 2025Updated last year
- Mutation tracker for microbial genomes☆14Sep 30, 2020Updated 6 years ago
- Nextflow pipeline for generation of phylogenetic trees to be visualized in Auspice.☆11Jan 6, 2026Updated 9 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- How many distinct k-mers are there in a sequence?☆11Feb 4, 2026Updated 8 months ago
- Split Kmer Analysis☆67May 26, 2022Updated 4 years ago
- finding conserved regions in highly diverse genomes☆16May 25, 2026Updated 4 months ago
- Wavefront alignment algorithm (WFA) in Golang☆33Aug 21, 2026Updated last month
- Computation of average nucleotide identity with the use of MMseqs2☆24Dec 11, 2024Updated last year
- LoFreq Version 3☆27Feb 25, 2021Updated 5 years ago
- memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping☆63Jan 22, 2026Updated 8 months ago
- Fast and memory efficient partial order alignment with minipoa☆22Updated this week
- ☆20Sep 16, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆15May 22, 2025Updated last year
- Automated pipeline for amplicon sequence analysis☆10Nov 25, 2025Updated 10 months ago
- De novo VIral Genome Annotator☆26Jan 11, 2026Updated 9 months ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- tools in python and R for analyzing biological count data, especially from single cell RNAseq☆23Feb 1, 2024Updated 2 years ago
- A Nextflow workflow for QC, evaluation, and profiling of metagenomic samples using short- and long-read technologies☆39May 25, 2023Updated 3 years ago
- ☆10Jun 9, 2025Updated last year
- HAlign 4: A New Strategy for Rapidly Aligning Millions of Sequences☆20Sep 21, 2026Updated 3 weeks ago
- Meta-Omics Software for Community Analysis☆36Jun 4, 2026Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A taxonomic classifier for shotgun metagenomics reads☆10Aug 26, 2026Updated last month
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14May 29, 2026Updated 4 months ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated last year
- Tool for exploring sequence alignment algorithms☆14Aug 30, 2024Updated 2 years ago
- ViBE: a hierarchical BERT model to identify viruses using metagenome sequencing data☆11Sep 6, 2022Updated 4 years ago
- Visualize microbial evolution at the SNP level!☆18Aug 12, 2025Updated last year
- Plasmid analysis using rearrangement distances☆56Jul 19, 2026Updated 2 months ago
- snakemake-powered cli to download genomes using NCBI datasets☆15Aug 14, 2025Updated last year
- kClust is a fast and sensitive clustering method for the clustering of protein sequences. It is able to cluster large protein databases d…☆18Feb 12, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Fast interval intersection library☆45Oct 1, 2026Updated 2 weeks ago
- Repository for Bioinformatics scripts and basic programs developed by L.M.C☆10Jun 2, 2023Updated 3 years ago
- METAgenomic LONgitudinal Differential Abundance method☆15Dec 17, 2019Updated 6 years ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆54Jun 10, 2026Updated 4 months ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆67Aug 28, 2026Updated last month
- ☆18Oct 7, 2024Updated 2 years ago
- An accurate and ultra-fast hybrid genome assembler☆88Apr 10, 2024Updated 2 years ago