niu-lab / gclustView external linksLinks
genome sized sequences clustering
☆17Dec 29, 2020Updated 5 years ago
Alternatives and similar repositories for gclust
Users that are interested in gclust are comparing it to the libraries listed below
Sorting:
- A repo with just adapter sequences☆15Jul 7, 2025Updated 7 months ago
- Chimera: A Versatile Metagenomic Classification Tool☆20Feb 1, 2026Updated last week
- Automated pipeline for amplicon sequence analysis☆11Nov 25, 2025Updated 2 months ago
- De novo VIral Genome Annotator☆24Jan 11, 2026Updated last month
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆46Jan 27, 2026Updated 2 weeks ago
- ☆10Jun 9, 2025Updated 8 months ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated last year
- ☆15May 22, 2025Updated 8 months ago
- A taxonomic classifier for shotgun metagenomics reads☆11Apr 4, 2025Updated 10 months ago
- HAlign 4: A New Strategy for Rapidly Aligning Millions of Sequences☆16Feb 6, 2026Updated last week
- ViBE: a hierarchical BERT model to identify viruses using metagenome sequencing data☆11Sep 6, 2022Updated 3 years ago
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated 6 months ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated 5 months ago
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Dec 20, 2021Updated 4 years ago
- Tool for exploring sequence alignment algorithms☆13Aug 30, 2024Updated last year
- snakemake-powered cli to download genomes using NCBI datasets☆14Aug 14, 2025Updated 6 months ago
- Strain resolver for metagenomics☆80Aug 2, 2024Updated last year
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14Aug 7, 2023Updated 2 years ago
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆19Jul 24, 2023Updated 2 years ago
- De novo clustering of long transcript reads into genes☆19Dec 15, 2025Updated last month
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆68Sep 26, 2024Updated last year
- Wavefront alignment algorithm (WFA) in Golang☆32Jul 26, 2025Updated 6 months ago
- Pipeline to run qiime2 with snakemake☆16Apr 17, 2020Updated 5 years ago
- ☆13Dec 26, 2025Updated last month
- Mutation tracker for microbial genomes☆14Sep 30, 2020Updated 5 years ago
- ☆17Oct 7, 2024Updated last year
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Dec 5, 2018Updated 7 years ago
- Meta-Omics Software for Community Analysis☆37Nov 4, 2024Updated last year
- memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping☆63Jan 22, 2026Updated 3 weeks ago
- Split Kmer Analysis☆66May 26, 2022Updated 3 years ago
- kClust is a fast and sensitive clustering method for the clustering of protein sequences. It is able to cluster large protein databases d…☆18Feb 12, 2019Updated 7 years ago
- Organism-specific interpretation of AMR genotypes☆15Mar 13, 2024Updated last year
- A Nextflow workflow for QC, evaluation, and profiling of metagenomic samples using short- and long-read technologies☆37May 25, 2023Updated 2 years ago
- Fast interval intersection library☆44Aug 20, 2025Updated 5 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Apr 26, 2025Updated 9 months ago
- A bacterial GWAS pipeline written in Nextflow that uses Pyseer; Part III Project for Systems Biology at the University of Cambridge☆21Jan 20, 2026Updated 3 weeks ago
- finding conserved regions in highly diverse genomes☆15Jun 1, 2025Updated 8 months ago
- StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.☆17Dec 9, 2025Updated 2 months ago
- A simple pipeline for bacterial assembly and quality control☆16Jan 30, 2026Updated 2 weeks ago