☆65Sep 14, 2023Updated 2 years ago
Alternatives and similar repositories for protpardelle
Users that are interested in protpardelle are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Diffusion-based all-atom protein generative model.☆233Aug 27, 2025Updated 6 months ago
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆186Apr 21, 2024Updated last year
- Implementation of Protein Invariant Point Packer (PIPPack)☆35May 28, 2024Updated last year
- ☆66Apr 8, 2025Updated 11 months ago
- Implementation for SE(3) diffusion model with application to protein backbone generation☆415Jul 3, 2023Updated 2 years ago
- Generative diverse protein backbones by protein language model☆34Feb 27, 2026Updated 3 weeks ago
- Implementation of FlowSite and HarmonicFlow from the paper "Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding …☆105Jul 30, 2024Updated last year
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆88Jun 23, 2024Updated last year
- FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation☆278Dec 10, 2024Updated last year
- Rank binders by structure modeling☆16Mar 10, 2025Updated last year
- Code for our paper "Protein sequence design with a learned potential"☆34Aug 5, 2021Updated 4 years ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆330Oct 28, 2024Updated last year
- Protein representation and design under a single training scheme☆24Mar 3, 2026Updated 3 weeks ago
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆113Mar 4, 2026Updated 2 weeks ago
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆180Apr 6, 2023Updated 2 years ago
- Structure-conditioned masked language modeling for protein sequence design☆72Jan 31, 2024Updated 2 years ago
- ☆211Apr 21, 2025Updated 11 months ago
- Adapting protein language models for structure-conditioned design☆40Aug 5, 2024Updated last year
- ☆15Mar 28, 2025Updated 11 months ago
- Fast protein backbone generation with SE(3) flow matching.☆319Jul 19, 2024Updated last year
- protein backbone refinement☆15Sep 12, 2024Updated last year
- ☆214Sep 24, 2024Updated last year
- ☆38Oct 16, 2024Updated last year
- Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…☆89Jul 25, 2022Updated 3 years ago
- ☆96Oct 14, 2025Updated 5 months ago
- protein structure generation with sparse all-atom denoising models☆60Feb 25, 2026Updated last month
- Fast protein structure searching or your money back☆118Mar 17, 2026Updated last week
- Protein Sequence Evolutionary Information Language Model☆13Oct 5, 2023Updated 2 years ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆232Aug 7, 2025Updated 7 months ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆121May 27, 2025Updated 9 months ago
- ☆12Nov 16, 2023Updated 2 years ago
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆190Jun 24, 2024Updated last year
- Fold Conditioned protein design pipeline based on AF2Multimer Hallucination☆50Dec 2, 2025Updated 3 months ago
- Public RFDiffusionAA repo☆472Jul 9, 2024Updated last year
- A generative model for programmable protein design☆804Apr 11, 2024Updated last year
- ☆118Dec 7, 2022Updated 3 years ago
- ☆80Feb 26, 2024Updated 2 years ago
- NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement☆47Oct 28, 2023Updated 2 years ago
- ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)☆356Jun 29, 2023Updated 2 years ago