alexechu / protpardelleLinks
☆65Updated 2 years ago
Alternatives and similar repositories for protpardelle
Users that are interested in protpardelle are comparing it to the libraries listed below
Sorting:
- Aligning protein generative models with experimental fitness☆114Updated 2 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆83Updated last year
- Sidechain conditioning and modeling for full-atom protein sequence design☆130Updated last month
- ☆97Updated last year
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆80Updated last year
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated 2 years ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆90Updated 6 months ago
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆47Updated last year
- Code for humanization of antibody and nanobody☆67Updated 4 months ago
- Official repository of EnzymeFlow☆97Updated last year
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆98Updated last year
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆42Updated 4 months ago
- ☆132Updated 6 months ago
- ☆108Updated 2 years ago
- Code and Pre-Trained Models for "AttnPacker: An end-to-end deep learning method for protein side-chain packing"☆90Updated 2 years ago
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆50Updated 2 weeks ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆115Updated 7 months ago
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆58Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆69Updated last year
- This repository implements Gibbs sampling with Graph-based Smoothing☆40Updated last year
- Public Release of ProGen3 family of Models☆93Updated 5 months ago
- ☆114Updated 3 years ago
- Official repository for DiffPepBuilder and DiffPepDock tools☆113Updated 2 months ago
- Evaluating Protein Binding Interfaces with Transformer Networks☆46Updated 2 years ago
- A benchmark for 3D biomolecular structure prediction models☆67Updated 7 months ago
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆114Updated 4 months ago
- A standardized protein design benchmark for motif-scaffolding problems☆72Updated last week
- Official repository of GENzyme☆59Updated last year
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆80Updated 4 months ago
- Reaction-Conditioned Virtual Screening of Enzymes☆40Updated 6 months ago