alexechu / protpardelleLinks
☆65Updated 2 years ago
Alternatives and similar repositories for protpardelle
Users that are interested in protpardelle are comparing it to the libraries listed below
Sorting:
- Aligning protein generative models with experimental fitness☆117Updated 3 months ago
- ☆96Updated last year
- Sidechain conditioning and modeling for full-atom protein sequence design☆133Updated 3 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆85Updated last year
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆81Updated last year
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆61Updated 2 years ago
- Official repository of EnzymeFlow☆98Updated last year
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆52Updated 2 months ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆91Updated 8 months ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆120Updated 8 months ago
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆47Updated last year
- Code for humanization of antibody and nanobody☆72Updated 5 months ago
- ☆133Updated 8 months ago
- Profluent-E1 family of Protein Encoder Models☆102Updated 2 months ago
- Evaluating Protein Binding Interfaces with Transformer Networks☆47Updated 2 years ago
- Structure-conditioned masked language modeling for protein sequence design☆70Updated 2 years ago
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆108Updated 2 weeks ago
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆58Updated 2 years ago
- ☆108Updated 2 years ago
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆57Updated last month
- Public Release of ProGen3 family of Models☆98Updated 6 months ago
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆98Updated last year
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆122Updated this week
- Official repository for DiffPepBuilder and DiffPepDock tools☆116Updated 3 months ago
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆42Updated 6 months ago
- 3D equivariant graph transformer for all-atom refinement of protein tertiary structures☆27Updated 2 years ago
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆53Updated 5 months ago
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆74Updated 2 years ago
- Reaction-Conditioned Virtual Screening of Enzymes☆42Updated 8 months ago
- A standardized protein design benchmark for motif-scaffolding problems☆73Updated 2 weeks ago