alexechu / protpardelleLinks
☆64Updated 2 years ago
Alternatives and similar repositories for protpardelle
Users that are interested in protpardelle are comparing it to the libraries listed below
Sorting:
- Aligning protein generative models with experimental fitness☆116Updated 3 months ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆132Updated 2 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆84Updated last year
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆80Updated last year
- ☆97Updated last year
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated 2 years ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆91Updated 7 months ago
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆47Updated last year
- Code for humanization of antibody and nanobody☆68Updated 4 months ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆41Updated last year
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆115Updated 7 months ago
- Official repository of EnzymeFlow☆97Updated last year
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆58Updated last year
- Evaluating Protein Binding Interfaces with Transformer Networks☆46Updated 2 years ago
- A standardized protein design benchmark for motif-scaffolding problems☆72Updated 3 weeks ago
- ☆108Updated 2 years ago
- Structure-conditioned masked language modeling for protein sequence design☆70Updated last year
- ☆114Updated 3 years ago
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆98Updated last year
- A benchmark for 3D biomolecular structure prediction models☆67Updated 8 months ago
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆42Updated 5 months ago
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆81Updated 5 months ago
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆50Updated last month
- Official repository for DiffPepBuilder and DiffPepDock tools☆114Updated 2 months ago
- Reaction-Conditioned Virtual Screening of Enzymes☆40Updated 7 months ago
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆53Updated last month
- ☆134Updated 7 months ago
- ☆61Updated last year
- 3D equivariant graph transformer for all-atom refinement of protein tertiary structures☆27Updated 2 years ago
- Public Release of ProGen3 family of Models☆93Updated 5 months ago