☆64Sep 14, 2023Updated 3 years ago
Alternatives and similar repositories for protpardelle
Users that are interested in protpardelle are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Diffusion-based all-atom protein generative model.☆238Aug 27, 2025Updated last year
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆191Apr 21, 2024Updated 2 years ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆37May 28, 2024Updated 2 years ago
- Implementation for SE(3) diffusion model with application to protein backbone generation☆427Jul 3, 2023Updated 3 years ago
- Protein Sequence Evolutionary Information Language Model☆14Oct 5, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Code for our paper "Protein sequence design with a learned potential"☆34Aug 5, 2021Updated 5 years ago
- Structure-conditioned masked language modeling for protein sequence design☆75Jan 31, 2024Updated 2 years ago
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆179Apr 6, 2023Updated 3 years ago
- Adapting protein language models for structure-conditioned design☆43Aug 5, 2024Updated 2 years ago
- Implementation of FlowSite and HarmonicFlow from the paper "Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding …☆108Jul 30, 2024Updated 2 years ago
- ☆37Oct 16, 2024Updated 2 years ago
- protein backbone refinement☆16Sep 12, 2024Updated 2 years ago
- Rank binders by structure modeling☆17Apr 10, 2026Updated 6 months ago
- FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation☆300Dec 10, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆221Sep 24, 2024Updated 2 years ago
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆126Oct 26, 2026Updated last week
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆334Oct 28, 2024Updated 2 years ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆90Jun 23, 2024Updated 2 years ago
- protein structure generation with sparse all-atom denoising models☆65Sep 30, 2026Updated last month
- ☆214Apr 21, 2025Updated last year
- ☆73Apr 8, 2025Updated last year
- Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…☆89Jul 25, 2022Updated 4 years ago
- ☆103Jul 24, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Fast protein backbone generation with SE(3) flow matching.☆328Jul 19, 2024Updated 2 years ago
- Intrinsic-Extrinsic Convolution and Pooling for Learning on 3D Protein Structures☆49Jan 24, 2022Updated 4 years ago
- ☆81May 4, 2026Updated 5 months ago
- Generative diverse protein backbones by protein language model☆35Feb 27, 2026Updated 8 months ago
- Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch☆159Dec 27, 2022Updated 3 years ago
- Compressing protein structures effectively with torsion angles☆199Sep 7, 2026Updated last month
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆126May 27, 2025Updated last year
- ☆36Mar 2, 2026Updated 8 months ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆107Apr 24, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆144Jun 3, 2025Updated last year
- ☆12Feb 17, 2023Updated 3 years ago
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆102Jul 29, 2024Updated 2 years ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated 2 years ago
- NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement☆50Oct 28, 2023Updated 3 years ago
- TMol - Rosetta on the GPU☆116Updated this week
- Sidechain conditioning and modeling for full-atom protein sequence design☆150Nov 11, 2025Updated 11 months ago