alexechu / protpardelleLinks
☆65Updated 2 years ago
Alternatives and similar repositories for protpardelle
Users that are interested in protpardelle are comparing it to the libraries listed below
Sorting:
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆82Updated last year
- Sidechain conditioning and modeling for full-atom protein sequence design☆124Updated 4 months ago
- ☆94Updated last year
- Aligning protein generative models with experimental fitness☆108Updated last week
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated 2 years ago
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆78Updated last year
- ☆302Updated this week
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆86Updated 4 months ago
- Official repository of EnzymeFlow☆94Updated 10 months ago
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆57Updated last year
- ☆107Updated 2 years ago
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆45Updated 10 months ago
- Public Release of ProGen3 family of Models☆81Updated 3 months ago
- Evaluating Protein Binding Interfaces with Transformer Networks☆47Updated 2 years ago
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆98Updated last year
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆49Updated 3 weeks ago
- ☆121Updated 4 months ago
- Official repository for DiffPepBuilder and DiffPepDock tools☆104Updated last week
- A benchmark for 3D biomolecular structure prediction models☆66Updated 5 months ago
- Reaction-Conditioned Virtual Screening of Enzymes☆39Updated 4 months ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆114Updated 5 months ago
- ☆72Updated 4 months ago
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆59Updated last year
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆49Updated 11 months ago
- ☆113Updated 2 years ago
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆76Updated 2 months ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆39Updated last year
- A standardized protein design benchmark for motif-scaffolding problems☆70Updated 3 months ago
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆72Updated 2 years ago
- Structure-conditioned masked language modeling for protein sequence design☆69Updated last year