EigenFold: Generative Protein Structure Prediction with Diffusion Models
☆180Apr 6, 2023Updated 2 years ago
Alternatives and similar repositories for EigenFold
Users that are interested in EigenFold are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Implementation for SE(3) diffusion model with application to protein backbone generation☆415Jul 3, 2023Updated 2 years ago
- Implementation of FlowSite and HarmonicFlow from the paper "Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding …☆105Jul 30, 2024Updated last year
- Diffusion models of protein structure; trigonometry and attention are all you need!☆565Dec 12, 2023Updated 2 years ago
- AlphaFold Meets Flow Matching for Generating Protein Ensembles☆518Oct 21, 2025Updated 5 months ago
- Fast protein backbone generation with SE(3) flow matching.☆319Jul 19, 2024Updated last year
- ☆118Dec 7, 2022Updated 3 years ago
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆186Apr 21, 2024Updated last year
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆274Feb 14, 2024Updated 2 years ago
- FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation☆278Dec 10, 2024Updated last year
- ☆65Sep 14, 2023Updated 2 years ago
- Database of Interacting Protein Structures (DIPS)☆105Jan 26, 2024Updated 2 years ago
- Diffusion-based all-atom protein generative model.☆233Aug 27, 2025Updated 6 months ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆330Oct 28, 2024Updated last year
- Compressing protein structures effectively with torsion angles☆191Feb 10, 2026Updated last month
- A generative model for programmable protein design☆804Apr 11, 2024Updated last year
- ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)☆356Jun 29, 2023Updated 2 years ago
- ☆211Apr 21, 2025Updated 11 months ago
- OmegaFold Release Code☆615Dec 12, 2022Updated 3 years ago
- Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking☆1,461May 2, 2025Updated 10 months ago
- Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)☆232Dec 29, 2023Updated 2 years ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆60May 6, 2024Updated last year
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆172Dec 24, 2023Updated 2 years ago
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆267Apr 27, 2025Updated 10 months ago
- Protein-ligand structure prediction☆239Jul 31, 2025Updated 7 months ago
- Generation of protein sequences and evolutionary alignments via discrete diffusion models☆664Jan 15, 2026Updated 2 months ago
- EquiDock: geometric deep learning for fast rigid 3D protein-protein docking☆256Sep 22, 2023Updated 2 years ago
- ☆214Sep 24, 2024Updated last year
- NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement☆47Oct 28, 2023Updated 2 years ago
- Implementation of Torsional Diffusion for Molecular Conformer Generation (NeurIPS 2022)☆281Feb 10, 2024Updated 2 years ago
- ☆244May 22, 2023Updated 2 years ago
- ☆556Jul 10, 2022Updated 3 years ago
- ☆80Feb 26, 2024Updated 2 years ago
- An open-source platform for developing protein models beyond AlphaFold.☆414Jun 26, 2024Updated last year
- DiffLinker: Equivariant 3D-Conditional Diffusion Model for Molecular Linker Design☆373Apr 17, 2024Updated last year
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆177Oct 7, 2025Updated 5 months ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆137Nov 11, 2025Updated 4 months ago
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆81Mar 7, 2024Updated 2 years ago
- Plausibility checks for generated molecule poses.☆363Mar 7, 2026Updated 2 weeks ago
- ☆256Jul 31, 2024Updated last year