Alternatives and similar repositories for NAEPro

Users that are interested in NAEPro are comparing it to the libraries listed below

• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆33Updated 7 months ago
• Kuhlman-Lab / PIPPack
  Implementation of Protein Invariant Point Packer (PIPPack)
  ☆32Updated last year
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆38Updated 9 months ago
• violet-sto / Bridge-IF
  Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"
  ☆12Updated 3 months ago
• PKUliujl / GeoSeqBuilder
  ☆27Updated 4 months ago
• JoreyYan / Originflow
  ☆15Updated last month
• HannesStark / CodonMPNN
  ☆27Updated 6 months ago
• RosettaCommons / AF2_peptide_hallucination
  Code for designing binders to flexible peptides with AlphaFold2 Hallucination
  ☆23Updated last year
• KoubaPetr / Flexpert
  Code for the paper "Learning to engineer protein flexibility".
  ☆18Updated 3 months ago
• DeepGraphLearning / esm-s
  Structure-Informed Protein Language Model
  ☆34Updated last year
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆33Updated 3 months ago
• EureKaZhu / DiffAffinity
  Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)
  ☆36Updated last year
• bzho3923 / CPDiffusion
  ☆23Updated 8 months ago
• ai4protein / VenusX
  ☆13Updated last month
• ak422 / DDAffinity
  ☆20Updated last month
• A4Bio / FoldToken_open
  ☆19Updated 7 months ago
• protddg-bench / protddg-bench
  Scoring methods for predicting the DDG upon protein mutation
  ☆14Updated 2 years ago
• luo-group / SPURS
  Protein stability prediction using rewired protein generative models
  ☆24Updated last month
• LirongWu / Uni-Anti
  ☆15Updated 5 months ago
• sirius777coder / GPDL
  Generative diverse protein backbones by protein language model
  ☆32Updated 6 months ago
• petergroth / FLOP
  This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.
  ☆22Updated 2 years ago
• mjendrusch / salad
  protein structure generation with sparse all-atom denoising models
  ☆32Updated 3 weeks ago
• matsagad / mres-project
  Conditioning diffusion models for scaffolding protein motifs. A repository for my master's dissertation.
  ☆10Updated 6 months ago
• mgreenig / IgCraft
  Versatile human antibody sequence design
  ☆16Updated last month
• ComputArtCMCG / ProBID-NET
  ☆14Updated 3 weeks ago
• oxpig / kasearch
  KA-Search: Rapid and exhaustive sequence identity search of known antibodies
  ☆22Updated 11 months ago
• kirjner / GGS
  This repository implements Gibbs sampling with Graph-based Smoothing
  ☆38Updated last year
• DeepGraphLearning / S3F
  Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
  ☆38Updated 6 months ago
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆42Updated 6 months ago
• bzho3923 / ProtLGN
  ☆31Updated 10 months ago