Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
☆90Jun 23, 2024Updated 2 years ago
Alternatives and similar repositories for Proteus
Users that are interested in Proteus are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆193Jun 24, 2024Updated 2 years ago
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆13Nov 14, 2025Updated 8 months ago
- ☆118Jan 3, 2026Updated 6 months ago
- Diffusion-based all-atom protein generative model.☆236Aug 27, 2025Updated 10 months ago
- ProteinReDiff: Complex-based ligand-binding proteins redesign by equivariant diffusion-based generative models☆39Nov 25, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Implementation for SE(3) diffusion model with application to protein backbone generation☆423Jul 3, 2023Updated 3 years ago
- ☆217Sep 24, 2024Updated last year
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆59May 6, 2024Updated 2 years ago
- Fast protein backbone generation with SE(3) flow matching.☆327Jul 19, 2024Updated 2 years ago
- ☆144Jun 3, 2025Updated last year
- ☆231Mar 2, 2024Updated 2 years ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆70May 28, 2026Updated last month
- ☆47Sep 16, 2024Updated last year
- Sidechain conditioning and modeling for full-atom protein sequence design☆144Nov 11, 2025Updated 8 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Public RFDiffusionAA repo☆483Jul 9, 2024Updated 2 years ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆37Nov 5, 2025Updated 8 months ago
- ☆605Feb 6, 2025Updated last year
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆177Jun 25, 2026Updated 3 weeks ago
- ☆18Mar 13, 2024Updated 2 years ago
- AlphaFold Meets Flow Matching for Generating Protein Ensembles☆536Mar 22, 2026Updated 3 months ago
- ☆64Sep 14, 2023Updated 2 years ago
- A conditionally adapted protein language model for the generation of enzymes☆24Nov 26, 2024Updated last year
- A standardized protein design benchmark for motif-scaffolding problems☆83Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Structure-conditioned masked language modeling for protein sequence design☆73Jan 31, 2024Updated 2 years ago
- FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation☆293Dec 10, 2024Updated last year
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆333Oct 28, 2024Updated last year
- Graphormer Based Protein Sequence Design☆26Feb 2, 2024Updated 2 years ago
- Aligning protein generative models with experimental fitness☆124Mar 12, 2026Updated 4 months ago
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆188Apr 21, 2024Updated 2 years ago
- Protein Origami via Genetic Fusions☆18Sep 19, 2022Updated 3 years ago
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Jul 25, 2023Updated 2 years ago
- Feynman-Kac steering for controllable protein diffusion☆37Jan 14, 2026Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆75Jul 2, 2025Updated last year
- Protein-ligand structure prediction☆240Jul 31, 2025Updated 11 months ago
- A generalized computational framework for biomolecular modeling.☆433Updated this week
- protein docking stuff☆56Apr 2, 2026Updated 3 months ago
- protein structure generation with sparse all-atom denoising models☆63Jul 7, 2026Updated 2 weeks ago
- Protein structure datasets for machine learning.☆115Apr 22, 2025Updated last year
- Generative diverse protein backbones by protein language model☆35Feb 27, 2026Updated 4 months ago