Wangchentong / ProteusLinks
Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
☆78Updated last year
Alternatives and similar repositories for Proteus
Users that are interested in Proteus are comparing it to the libraries listed below
Sorting:
- Sidechain conditioning and modeling for full-atom protein sequence design☆107Updated 3 months ago
- ☆95Updated 3 weeks ago
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆55Updated 3 weeks ago
- ☆152Updated 2 weeks ago
- ☆90Updated 8 months ago
- Code for humanization of antibody and nanobody☆42Updated 6 months ago
- A standardized protein design benchmark for motif-scaffolding problems☆61Updated last month
- [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design☆73Updated last month
- This repository implements Gibbs sampling with Graph-based Smoothing☆38Updated last year
- ☆106Updated 2 years ago
- ☆44Updated 3 weeks ago
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆38Updated 6 months ago
- Official repository of GENzyme☆51Updated 6 months ago
- Official repository of EnzymeFlow☆92Updated 6 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated last year
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆44Updated 5 months ago
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆78Updated last year
- ☆115Updated 2 weeks ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆78Updated 2 weeks ago
- ☆65Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆64Updated last year
- PINDER: The Protein INteraction Dataset and Evaluation Resource☆125Updated 7 months ago
- ☆78Updated last year
- ☆81Updated last week
- ☆60Updated last year
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆55Updated last year
- Extension of ThermoMPNN for double mutant predictions☆33Updated 3 months ago
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆126Updated 3 weeks ago
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆35Updated last year
- Evaluating Protein Binding Interfaces with Transformer Networks☆45Updated last year