Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
☆85Jun 23, 2024Updated last year
Alternatives and similar repositories for Proteus
Users that are interested in Proteus are comparing it to the libraries listed below
Sorting:
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆188Jun 24, 2024Updated last year
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆14Nov 14, 2025Updated 3 months ago
- Diffusion-based all-atom protein generative model.☆232Aug 27, 2025Updated 6 months ago
- ☆117Jan 3, 2026Updated 2 months ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆59May 6, 2024Updated last year
- ProteinReDiff: Complex-based ligand-binding proteins redesign by equivariant diffusion-based generative models☆39Nov 25, 2024Updated last year
- Implementation for SE(3) diffusion model with application to protein backbone generation☆415Jul 3, 2023Updated 2 years ago
- protein structure generation with sparse all-atom denoising models☆60Feb 25, 2026Updated last week
- ☆212Sep 24, 2024Updated last year
- ☆135Jun 3, 2025Updated 9 months ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆65Feb 2, 2026Updated last month
- Sidechain conditioning and modeling for full-atom protein sequence design☆137Nov 11, 2025Updated 3 months ago
- ☆65Sep 14, 2023Updated 2 years ago
- Fast protein backbone generation with SE(3) flow matching.☆315Jul 19, 2024Updated last year
- ☆216Mar 2, 2024Updated 2 years ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆120Aug 3, 2025Updated 7 months ago
- Public RFDiffusionAA repo☆467Jul 9, 2024Updated last year
- ☆47Sep 16, 2024Updated last year
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆73Jul 2, 2025Updated 8 months ago
- Graphormer Based Protein Sequence Design☆26Feb 2, 2024Updated 2 years ago
- ☆16Feb 25, 2026Updated last week
- Aligning protein generative models with experimental fitness☆119Oct 16, 2025Updated 4 months ago
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆170Feb 6, 2026Updated last month
- ☆547Feb 6, 2025Updated last year
- A conditionally adapted protein language model for the generation of enzymes☆23Nov 26, 2024Updated last year
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Jul 25, 2023Updated 2 years ago
- Structure-conditioned masked language modeling for protein sequence design☆71Jan 31, 2024Updated 2 years ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆36Nov 5, 2025Updated 4 months ago
- A standardized protein design benchmark for motif-scaffolding problems☆76Jan 27, 2026Updated last month
- FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation☆275Dec 10, 2024Updated last year
- AlphaFold Meets Flow Matching for Generating Protein Ensembles☆517Oct 21, 2025Updated 4 months ago
- Protein-ligand structure prediction☆239Jul 31, 2025Updated 7 months ago
- ☆18Mar 13, 2024Updated last year
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆328Oct 28, 2024Updated last year
- Protein structure datasets for machine learning.☆115Apr 22, 2025Updated 10 months ago
- Protein representation and design under a single training scheme☆24Updated this week
- In silico directed evolution of peptide binders with AlphaFold☆261Jan 5, 2026Updated 2 months ago
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆115Jan 28, 2026Updated last month
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆186Apr 21, 2024Updated last year