Graylab / GeoDockLinks
Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.
☆98Updated last year
Alternatives and similar repositories for GeoDock
Users that are interested in GeoDock are comparing it to the libraries listed below
Sorting:
- Official repository of EnzymeFlow☆95Updated 11 months ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆87Updated 5 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated 2 years ago
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆77Updated 3 months ago
- Official repository for DiffPepBuilder and DiffPepDock tools☆107Updated 3 weeks ago
- ☆114Updated 2 years ago
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆49Updated last month
- Sidechain conditioning and modeling for full-atom protein sequence design☆126Updated last week
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆57Updated 5 months ago
- Structure-conditioned masked language modeling for protein sequence design☆69Updated last year
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆84Updated last year
- ☆126Updated 5 months ago
- ☆65Updated 2 years ago
- ☆90Updated last month
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆39Updated last year
- Open source code for AlphaFold.☆39Updated 2 years ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆70Updated last year
- Structure prediction of alternative protein conformations☆80Updated 8 months ago
- ☆71Updated 7 months ago
- Code for humanization of antibody and nanobody☆63Updated 2 months ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆46Updated 2 weeks ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆119Updated 8 months ago
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆46Updated 11 months ago
- Dataset and package for working with protein-protein interactions in 3D☆96Updated 6 months ago
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆105Updated 2 weeks ago
- Official repository of GENzyme☆55Updated 11 months ago
- Aligning protein generative models with experimental fitness☆111Updated last month
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆52Updated 4 months ago
- Improved antibody structure-based design using inverse folding☆144Updated 2 months ago
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆57Updated last year