Alternatives and similar repositories for APPRAISE

Users that are interested in APPRAISE are comparing it to the libraries listed below

• Kuhlman-Lab / PIPPack
  Implementation of Protein Invariant Point Packer (PIPPack)
  ☆33Updated last year
• csi-greifflab / developability_profiling
  ☆23Updated 7 months ago
• oxpig / AbLang2
  An antibody-specific language model focusing on NGL prediction
  ☆30Updated 11 months ago
• mjendrusch / salad
  protein structure generation with sparse all-atom denoising models
  ☆35Updated last week
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆41Updated last week
• alicetinglab / ConformationalBiasing
  Code for designing biased protein states
  ☆14Updated last month
• strauchlab / iNNterfaceDesign
  ☆19Updated 2 years ago
• amyguo1997 / dynamic_protein_design
  Code for deep learning guided design of dynamic proteins
  ☆30Updated last year
• ShenLab / SeqDance
  code for SeqDance/ESMDance, biophysics-informed protein language models
  ☆39Updated 4 months ago
• vendruscolo-lab / AlphaFold-IDP
  This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by u…
  ☆19Updated 7 months ago
• CarbonMatrixLab / immunefold
  Official open-source of Accurate structure prediction of immune proteins using parameter-efficient transfer learning
  ☆21Updated 4 months ago
• violet-sto / Bridge-IF
  Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"
  ☆15Updated 4 months ago
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆38Updated 10 months ago
• oxpig / kasearch
  KA-Search: Rapid and exhaustive sequence identity search of known antibodies
  ☆22Updated last year
• Rocklin-Lab / cdna-display-proteolysis-pipeline
  ☆25Updated 2 years ago
• stracquadaniolab / prevent-nf
  PREVENT: PRotein Engineering by Variational frEe eNergy approximaTion
  ☆12Updated last year
• swanss / FragFold
  Fragment binding prediction with ColabFold
  ☆35Updated 4 months ago
• sokrypton / roscon2024
  Tutorial files
  ☆11Updated last year
• bwicky / oligomer_hallucination
  ☆36Updated last year
• KosinskiLab / alphafold3x
  Explicit crosslinks in AlphaFold 3
  ☆22Updated 4 months ago
• skalyaanamoorthy / PSLMs
  ☆19Updated 9 months ago
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆30Updated last year
• KULL-Centre / _2024_cagiada_stability
  ☆70Updated 4 months ago
• sirius777coder / GPDL
  Generative diverse protein backbones by protein language model
  ☆32Updated 7 months ago
• RosettaCommons / AF2_peptide_hallucination
  Code for designing binders to flexible peptides with AlphaFold2 Hallucination
  ☆26Updated last year
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆51Updated 2 months ago
• tommyhuangthu / EvoEF2
  Physical energy function for protein sequence design
  ☆31Updated 2 years ago
• KhondamirRustamov / AF-Multimer-cluster
  ☆9Updated last month
• ComputArtCMCG / ProBID-NET
  ☆14Updated 2 months ago
• PDBeurope / protein-cluster-conformers
  Clusters protein chains based on CA distance difference
  ☆15Updated 6 months ago