Alternatives and similar repositories for APPRAISE

Users that are interested in APPRAISE are comparing it to the libraries listed below

• Gleghorn-Lab / DSM
  Protein representation and design under a single training scheme
  ☆24Updated last month
• csi-greifflab / developability_profiling
  ☆28Updated 5 months ago
• strauchlab / iNNterfaceDesign
  ☆20Updated 3 years ago
• oxpig / AbLang2
  An antibody-specific language model focusing on NGL prediction
  ☆36Updated last year
• Kuhlman-Lab / PIPPack
  Implementation of Protein Invariant Point Packer (PIPPack)
  ☆35Updated last year
• amyguo1997 / dynamic_protein_design
  Code for deep learning guided design of dynamic proteins
  ☆32Updated last year
• violet-sto / Bridge-IF
  Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"
  ☆18Updated 10 months ago
• Rocklin-Lab / cdna-display-proteolysis-pipeline
  ☆25Updated 2 years ago
• ComputArtCMCG / ProBID-NET
  ☆15Updated 8 months ago
• Lailabcode / DeepViscosity
  DeepViscosity is a deep learning ANN model developed to predict high concentrated monoclonal antibody viscosity classes (Low <= 20cps, Hi…
  ☆20Updated 6 months ago
• mjendrusch / salad
  protein structure generation with sparse all-atom denoising models
  ☆57Updated last month
• sokrypton / roscon2024
  Tutorial files
  ☆12Updated last year
• sirius777coder / GPDL
  Generative diverse protein backbones by protein language model
  ☆34Updated 3 months ago
• mgreenig / IgCraft
  Versatile human antibody sequence design
  ☆21Updated 8 months ago
• stracquadaniolab / prevent-nf
  PREVENT: PRotein Engineering by Variational frEe eNergy approximaTion
  ☆13Updated last year
• bwicky / oligomer_hallucination
  ☆37Updated 2 years ago
• KosinskiLab / alphafold3x
  Explicit crosslinks in AlphaFold 3
  ☆23Updated 10 months ago
• AmeyaHarmalkar / therML
  The official repository for TherML - a machine learning approach to predict scFv and antibody thermostability
  ☆14Updated 2 years ago
• oxpig / kasearch
  KA-Search: Rapid and exhaustive sequence identity search of known antibodies
  ☆23Updated last year
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆35Updated 2 years ago
• vendruscolo-lab / AlphaFold-IDP
  This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by u…
  ☆19Updated 3 months ago
• protddg-bench / protddg-bench
  Scoring methods for predicting the DDG upon protein mutation
  ☆16Updated 2 years ago
• Kortemme-Lab / local_protein_sequence_design
  Design a local part of a protein
  ☆20Updated 3 years ago
• lehner-lab / domainome
  ☆16Updated last year
• jproney / ProteinEBM
  ☆83Updated last month
• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆37Updated last year
• CarbonMatrixLab / immunefold
  Official open-source of Accurate structure prediction of immune proteins using parameter-efficient transfer learning
  ☆22Updated 10 months ago
• meilerlab / probabilities_design
  ☆15Updated 10 months ago
• LPDI-EPFL / FunFolDesData
  Rosetta FunFolDes – a general framework for the computational design of functional proteins.
  ☆21Updated 6 years ago
• LPDI-EPFL / RosettaSurf
  ☆15Updated 4 years ago