Alternatives and similar repositories for APPRAISE:

Users that are interested in APPRAISE are comparing it to the libraries listed below

• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆27Updated last year
• Kuhlman-Lab / alphafold3
  Kuhlman Lab Installation of AlphaFold3
  ☆25Updated last month
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆32Updated last month
• Kuhlman-Lab / PIPPack
  Implementation of Protein Invariant Point Packer (PIPPack)
  ☆32Updated 10 months ago
• KosinskiLab / alphafold3x
  Explicit crosslinks in AlphaFold 3
  ☆21Updated last month
• bwicky / oligomer_hallucination
  ☆35Updated last year
• AmeyaHarmalkar / therML
  The official repository for TherML - a machine learning approach to predict scFv and antibody thermostability
  ☆7Updated last year
• stracquadaniolab / prevent-nf
  PREVENT: PRotein Engineering by Variational frEe eNergy approximaTion
  ☆12Updated 9 months ago
• oxpig / kasearch
  KA-Search: Rapid and exhaustive sequence identity search of known antibodies
  ☆22Updated 9 months ago
• strauchlab / iNNterfaceDesign
  ☆19Updated 2 years ago
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆18Updated 3 months ago
• swanss / peptide_design
  This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"
  ☆16Updated last year
• sirius777coder / GPDL
  Generative diverse protein backbones by protein language model
  ☆31Updated 4 months ago
• vendruscolo-lab / AlphaFold-IDP
  This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by u…
  ☆18Updated 4 months ago
• luo-group / SPURS
  Protein stability prediction using rewired protein generative models
  ☆20Updated this week
• amyguo1997 / dynamic_protein_design
  Code for deep learning guided design of dynamic proteins
  ☆17Updated 9 months ago
• ohuelab / ColabDesign-cyclic-binder
  ☆31Updated last year
• oxpig / AbLang2
  An antibody-specific language model focusing on NGL prediction
  ☆26Updated 8 months ago
• LongxingCao / pymol_scripts
  bakerlab pymol scripts
  ☆22Updated 5 years ago
• PKUliujl / GeoSeqBuilder
  ☆26Updated 2 months ago
• mjendrusch / salad
  protein structure generation with sparse all-atom denoising models
  ☆30Updated this week
• Hoecker-Lab / protlego
  Automated construction of protein chimeras and their analysis.
  ☆14Updated last year
• swanss / FragFold
  Fragment binding prediction with ColabFold
  ☆33Updated last month
• johnnytam100 / AlphaCutter
  This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.
  ☆15Updated last year
• BioComputingUP / ring-pymol
  This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua
  ☆26Updated 2 months ago
• violet-sto / Bridge-IF
  Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"
  ☆12Updated last month
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆27Updated last year
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆34Updated 7 months ago
• iamysk / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆47Updated last week
• kiharalab / NuFold
  NuFold: End-to-End Approach for RNA Tertiary Structure Prediction with Flexible Nucleobase Center Representation
  ☆34Updated 3 weeks ago