dakpinaroglu / Frame2seq
Structure-conditioned masked language modeling for protein sequence design
☆61Updated last year
Alternatives and similar repositories for Frame2seq:
Users that are interested in Frame2seq are comparing it to the libraries listed below
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆56Updated last year
- [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design☆55Updated this week
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆50Updated 3 weeks ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆36Updated 3 months ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆68Updated last week
- Official repository of EnzymeFlow☆80Updated 3 months ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆66Updated 4 months ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆37Updated 9 months ago
- ☆87Updated 4 months ago
- ☆100Updated 2 years ago
- ☆73Updated last month
- ☆62Updated 2 months ago
- ☆66Updated last year
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆73Updated 8 months ago
- ☆43Updated 5 months ago
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆47Updated last month
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆50Updated last month
- Code for humanization of antibody and nanobody☆36Updated 3 months ago
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆71Updated last year
- Efficient implementatin of ESM family.☆53Updated last month
- Aligning protein generative models with experimental fitness☆85Updated 4 months ago
- ☆54Updated 11 months ago
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆38Updated 9 months ago
- ☆81Updated 4 months ago
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆99Updated this week
- Official repository of GENzyme☆42Updated 3 months ago
- ☆49Updated last month
- Official repository for Target-Specific De Novo Peptide Binder Design with DiffPepBuilder☆78Updated last week
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆88Updated 7 months ago