Alternatives and similar repositories for progres

Users that are interested in progres are comparing it to the libraries listed below

• althonos / mini3di
  A NumPy port of the foldseek code for encoding protein structures to 3di.
  ☆71Updated last month
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆55Updated 9 months ago
• maovshao / PLMSearch
  PLMSearch enables accurate and fast homologous protein search with only sequences as input
  ☆73Updated 3 weeks ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆90Updated last year
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆94Updated last year
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆59Updated 4 years ago
• steineggerlab / folddisco
  Fast indexing and search of discontinuous motifs in protein structures
  ☆86Updated last week
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆60Updated 6 months ago
• JudeWells / chainsaw
  ☆43Updated last year
• ncbi / SSDraw
  ☆84Updated last month
• minmarg / gtalign_alpha
  GTalign, high-performance protein structure alignment, superposition and search
  ☆50Updated last month
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆60Updated 2 months ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆69Updated 8 years ago
• soedinglab / MMseqs2-App
  MMseqs2 app to run on your workstation or servers
  ☆97Updated 2 weeks ago
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆34Updated 3 years ago
• pylelab / USalign
  Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins
  ☆159Updated 5 months ago
• psipred / DMPfold2
  Fast and accurate protein structure prediction
  ☆55Updated 8 months ago
• tymor22 / tm-vec
  ☆69Updated last year
• althonos / peptides.py
  Physicochemical properties, indices and descriptors for amino-acid sequences.
  ☆104Updated last month
• steineggerlab / colabfold-protocol
  ColabFold protocol
  ☆53Updated 11 months ago
• steineggerlab / foldmason
  Multiple Protein Structure Alignment at Scale with FoldMason
  ☆190Updated last week
• TattaBio / gLM2
  ☆70Updated last year
• flyark / AFM-LIS
  Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)
  ☆58Updated 6 months ago
• KIT-MBS / pydca
  Direct coupling analysis software for protein and RNA sequences
  ☆52Updated 2 months ago
• SNU-CSSB / RF2-Lite
  ☆30Updated last year
• brennanaba / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆54Updated 11 months ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆53Updated last month
• PDB-REDO / alphafill
  AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…
  ☆106Updated last week
• VarunUllanat / mint
  Learning the language of protein-protein interactions
  ☆98Updated 2 weeks ago
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆40Updated last year