greener-group / progresLinks
Fast protein structure searching or your money back
☆103Updated last month
Alternatives and similar repositories for progres
Users that are interested in progres are comparing it to the libraries listed below
Sorting:
- Evolutionary velocity with protein language models☆90Updated last year
- A domain parser for Alphafold models☆38Updated last year
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆55Updated 3 months ago
- ☆68Updated 8 months ago
- ☆49Updated 2 months ago
- MMseqs2 app to run on your workstation or servers☆81Updated this week
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆88Updated last year
- ☆39Updated 8 months ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆58Updated 4 years ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆106Updated 9 months ago
- Multiple Protein Structure Alignment at Scale with FoldMason☆174Updated last month
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆71Updated 5 months ago
- Physicochemical properties, indices and descriptors for amino-acid sequences.☆94Updated last month
- snakemake pipeline for creating trees from sequence sets☆79Updated 2 weeks ago
- Fast and accurate protein structure prediction☆52Updated 4 months ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆34Updated 3 years ago
- Ultra-fast in-silico structure mutation☆33Updated last month
- Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)☆54Updated 2 months ago
- ☆35Updated last year
- Learning the language of protein-protein interactions☆73Updated this week
- Mutation effects predicted from sequence co-variation☆65Updated 7 years ago
- Protein design and variant prediction using autoregressive generative models☆103Updated last year
- PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.☆23Updated last year
- ☆85Updated last year
- Python framework for doing ancestral sequence reconstruction☆38Updated 10 months ago
- Transmembrane proteins predicted through Language Model embeddings☆36Updated 3 weeks ago
- Protein 3D structure prediction pipeline☆80Updated this week
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆72Updated last year
- Fast indexing and search of discontinuous motifs in protein structures☆22Updated 3 weeks ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆54Updated 2 months ago