greener-group / progresLinks
Fast protein structure searching or your money back
☆112Updated 5 months ago
Alternatives and similar repositories for progres
Users that are interested in progres are comparing it to the libraries listed below
Sorting:
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆71Updated 3 weeks ago
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆73Updated last week
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- Detection of remote homology by comparison of protein language model representations☆54Updated 9 months ago
- Fast indexing and search of discontinuous motifs in protein structures☆81Updated last week
- A domain parser for Alphafold models☆40Updated last year
- Physicochemical properties, indices and descriptors for amino-acid sequences.☆102Updated 2 weeks ago
- Fast and accurate protein structure prediction☆54Updated 8 months ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆59Updated 5 months ago
- ☆43Updated 11 months ago
- ☆71Updated 11 months ago
- ColabFold protocol☆53Updated 11 months ago
- MMseqs2 app to run on your workstation or servers☆96Updated 2 weeks ago
- ☆68Updated 11 months ago
- Evolutionary velocity with protein language models☆94Updated last year
- ☆85Updated 2 weeks ago
- ☆30Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆59Updated 4 years ago
- Mutation effects predicted from sequence co-variation☆69Updated 8 years ago
- Multiple Protein Structure Alignment at Scale with FoldMason☆186Updated last week
- GTalign, high-performance protein structure alignment, superposition and search☆50Updated last month
- scripts and facilities for in-silico mutagenesis with FoldX☆59Updated 2 months ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆34Updated 3 years ago
- ☆22Updated 3 months ago
- Direct coupling analysis software for protein and RNA sequences☆52Updated last month
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆105Updated 4 months ago
- PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.☆23Updated last year
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆156Updated 4 months ago
- ☆37Updated 2 months ago
- PyMOL extension to color AlphaFold structures by confidence (pLDDT).☆110Updated last year