Alternatives and similar repositories for serine-hydrolase-design

Users that are interested in serine-hydrolase-design are comparing it to the libraries listed below

• mabr3112 / riff_diff_protflow
  ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.
  ☆77Updated last month
• Mingchenchen / AF3Score
  A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation
  ☆102Updated last week
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆70Updated 6 months ago
• bunzela / AIzymes
  ☆65Updated 3 months ago
• ELELAB / RosettaDDGPrediction
  ☆84Updated 2 months ago
• ikalvet / invrotzyme
  Utility for building inverse rotamer assemblies out of a Rosetta matcher/enzdes constraint file.
  ☆26Updated 10 months ago
• sokrypton / af2bind
  ☆54Updated 2 months ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆91Updated last month
• LBM-EPFL / CARBonAra
  Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…
  ☆47Updated 2 months ago
• WillHua127 / GENzyme
  Official repository of GENzyme
  ☆60Updated last year
• Ryan-Hu-Hu-Hu / GRACE
  GRACE: Generative Renaissance in Artificial Computational Enzyme Design
  ☆19Updated last year
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆133Updated 2 months ago
• bcov77 / silent_tools
  A bunch of shell utilities for dealing the silent files
  ☆75Updated 3 weeks ago
• YuzheWangPKU / DiffPepBuilder
  Official repository for DiffPepBuilder and DiffPepDock tools
  ☆114Updated 3 months ago
• Alex-Abrudan / DynamicMPNN
  ☆42Updated 6 months ago
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆66Updated 11 months ago
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆53Updated 3 months ago
• meneshail / TopoDiff
  Code release for "Improving diffusion-based protein backbone generation with global-geometry-aware latent encoding"
  ☆45Updated 5 months ago
• guyujun / FunclibLocal
  Rosetta Funclib
  ☆25Updated 5 years ago
• bene837 / af2seq
  ☆47Updated last year
• huifengzhao / RAPiDock
  ☆76Updated 3 months ago
• KexinZhangResearch / PhysDock
  Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction
  ☆87Updated 3 months ago
• snufoodbiochem / Alphafold3_tools
  ☆25Updated 11 months ago
• hongliangduan / HighFold
  ☆38Updated last year
• cytokineking / FreeBindCraft
  BindCraft modified to make PyRosetta use and installation optional: no license needed
  ☆118Updated 2 months ago
• regeneron-mpds / propermab
  ☆43Updated 9 months ago
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆71Updated 5 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆61Updated 8 months ago
• maranasgroup / CatPred
  Machine Learning models for in vitro enzyme kinetic parameter prediction
  ☆70Updated 9 months ago
• Kuhlman-Lab / evopro
  ☆94Updated 3 months ago