Alternatives and similar repositories for diffab

Users that are interested in diffab are comparing it to the libraries listed below

• ProteinDesignLab / protpardelle
  Diffusion-based all-atom protein generative model.
  ☆220Updated 3 weeks ago
• RosettaCommons / RFDesign
  Protein hallucination and inpainting with RoseTTAFold
  ☆267Updated 2 years ago
• RosettaCommons / protein_generator
  Joint sequence and structure generation with RoseTTAFold sequence space diffusion
  ☆318Updated 10 months ago
• drorlab / gvp-pytorch
  Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure
  ☆293Updated 2 years ago
• BytedProtein / ByProt
  ☆202Updated 11 months ago
• OATML-Markslab / ProteinGym
  Official repository for the ProteinGym benchmarks
  ☆347Updated last month
• FreyrS / dMaSIF
  ☆221Updated 2 years ago
• bjornwallner / DockQ
  DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models
  ☆320Updated last month
• zrqiao / NeuralPLexer
  NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model
  ☆306Updated last year
• a-r-j / ProteinWorkshop
  Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …
  ☆253Updated 4 months ago
• ketatam / DiffDock-PP
  Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)
  ☆217Updated last year
• Graylab / IgFold
  Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
  ☆371Updated 2 years ago
• wengong-jin / RefineGNN
  ☆130Updated 3 years ago
• RosettaCommons / RFantibody
  ☆275Updated 5 months ago
• uw-ipd / RoseTTAFold2
  ☆198Updated 4 months ago
• octavian-ganea / equidock_public
  EquiDock: geometric deep learning for fast rigid 3D protein-protein docking
  ☆246Updated last year
• dauparas / LigandMPNN
  ☆439Updated 7 months ago
• Zuricho / ProteinDesignLabs
  List of computational protein design research labs
  ☆195Updated 7 months ago
• aqlaboratory / genie
  De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds
  ☆180Updated last year
• zaixizhang / PocketGen
  PocketGen (Nature Machine Intelligence 24): Generating Full-Atom Ligand-Binding Protein Pockets
  ☆196Updated 5 months ago
• patrickbryant1 / Umol
  Protein-ligand structure prediction
  ☆226Updated last month
• luwei0917 / DynamicBind
  repo for DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model
  ☆263Updated last year
• uw-ipd / RoseTTAFold2NA
  RoseTTAFold2 protein/nucleic acid complex prediction
  ☆365Updated last year
• LPDI-EPFL / masif_seed
  Masif seed paper repository
  ☆157Updated 2 years ago
• gjoni / trDesign
  trRosetta for protein design
  ☆182Updated 4 years ago
• jertubiana / ScanNet
  ☆131Updated 2 months ago
• DeepGraphLearning / GearNet
  GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)
  ☆300Updated 3 months ago
• Graylab / IgLM
  Generative Language Modeling for Antibody Design
  ☆162Updated 11 months ago
• nrbennet / dl_binder_design
  ☆353Updated last year
• bjing2016 / alphaflow
  AlphaFold Meets Flow Matching for Generating Protein Ensembles
  ☆475Updated 8 months ago